Tomas,
Sorry for wrongly typing your name. Really apologize for that.
YS LING <ling8...@gmail.com> 於 2012年3月7日下午6:50 寫道：
> Hi Thomas,
> Since i'm a new user of MZmine. I can't really catch what do you mean by
> peak detection algorithms that MZmine are not going to work? Is there any
> reason for that? Is it related with the data format error or the peak
> separation problem?
> Thanks
>
> Tomas Pluskal <plus...@oist.jp> 於 2012年3月7日下午2:17 寫道：
>
> Hi Yee-Soon,
>>
>> OK I added support for this kind of file to MZmine. It will simply
>> treat the 'pr' scans as regular MS level 1 scans. This will be included in
>> MZmine 2.7.
>>
>> However, I am not sure what kind of processing you are planning with
>> this data - I think the peak detection algorithms that we use are not going
>> to work..
>>
>> Best regards,
>>
>> Tomas
>>
>>
>> On Mar 7, 2012, at 10:13 AM, YS LING wrote:
>>
>> Thomas,
>> I had sent to the https://www.yousendit.com/download/
>> M3BsTXRVdVUwVW1LRmNUQw<https://www.yousendit.com/download/M3BsTXRVdVUwVW1LRmNUQw>.
>> please do check it up.
>> Regarding that RAW data, I scan the biological lipids, phosphatidyl
>> choline (PC) under Parent ion scan mode m/z 184 (its common fragment). As
>> you can see, One single peak contains multiple PCs. besides, some std had
>> been spiked within the this scan.
>>
>> Tomas Pluskal <plus...@oist.jp> 於 2012年3月7日上午8:47 寫道：
>>
>>> Please use DropBox / RapidShare / Skydrive etc.
>>> http://www.google.com/?q=send+large+file
>>>
>>> Tomas
>>>
>>> On Mar 6, 2012, at 11:47 PM, YS LING wrote:
>>>
>>> Hi Thomas,
>>> The TIC file is quite huge, about 22MB (13mb when zipped). Is there any
>>> other way i can send it to you as gmail reported that your e-mail had
>>> rejected my attached file.
>>> Thanks a lot.
>>>
>>> Tomas Pluskal <plus...@oist.jp> 於 2012年3月6日下午12:26 寫道：
>>>
>>>> Hi Ys,
>>>>
>>>> So far I have never encountered "Parent ion Scan" file. If you can
>>>> provide some files to test and write some description of this data, I can
>>>> add the support to MZmine.
>>>>
>>>> Best regards,
>>>>
>>>> Tomas
>>>>
>>>>
>>>> On Mar 4, 2012, at 4:58 PM, YS LING wrote:
>>>>
>>>> Hi MZmine Development Team,
>>>>
>>>> I just download the MZmine software to analyze some of my RAW data
>>>> collected from the Thermo TSQ. I did install the Thermo specialized
>>>> software named 'MSFileReader'. I tried to run the raw data import, and it
>>>> kept showing the following error.
>>>>
>>>> Task error: java.io.IOexpection: Unexpected format: SCAN FILTER: +c
>>>> ESI Full pr 184.000 [300-1000] (XcalibourRawFileReadTask.java:218)
>>>>
>>>> <image.png>
>>>>
>>>>
>>>> Is this a bug or MZmine simply can't open the RAW data which obtained
>>>> via Parent ion Scan? Please do assist me with this problem. Thanks a lot.
>>>> --
>>>> YS LING
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Virtualization & Cloud Management Using Capacity Planning
>>>> Cloud computing makes use of virtualization - but cloud computing
>>>> also focuses on allowing computing to be delivered as a service.
>>>>
>>>> http://www.accelacomm.com/jaw/sfnl/114/51521223/_______________________________________________
>>>> Mzmine-devel mailing list
>>>> Mzmine-devel@lists.sourceforge.net
>>>> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
>>>>
>>>>
>>>> ===============================================
>>>> Tomas Pluskal
>>>> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
>>>> University
>>>> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
>>>> TEL: +81-98-966-8684
>>>>
>>>>
>>>
>>>
>>> --
>>> Yee-Soon LING
>>>
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>>>
>>>
>>> ===============================================
>>> Tomas Pluskal
>>> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
>>> University
>>> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
>>> TEL: +81-98-966-8684
>>>
>>>
>>
>>
>> --
>> Yee-Soon LING
>>
>> ------------------------------------------------------------------------------
>> Virtualization & Cloud Management Using Capacity Planning
>> Cloud computing makes use of virtualization - but cloud computing
>> also focuses on allowing computing to be delivered as a service.
>>
>> http://www.accelacomm.com/jaw/sfnl/114/51521223/_______________________________________________
>> Mzmine-devel mailing list
>> Mzmine-devel@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
>>
>>
>> ===============================================
>> Tomas Pluskal
>> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
>> University
>> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
>> TEL: +81-98-966-8684
>>
>>
>
>
> --
> Yee-Soon LING
>
--
Yee-Soon LING
------------------------------------------------------------------------------
Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
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