Dear, I had the same problem wioth windows 7, in the end the problem was that
the userprofile that is 'set' is not the same as the one you should add in the
script, not sure if you're on a windows 7 machine, but if yes, let me know and
i will try to find back how i did it.
Cheers, Geert.
----- Original Message -----
> From: "Pudney Chris (ext) GBJH" <chris.pud...@syngenta.com>
> To: mzmine-devel@lists.sourceforge.net
> Sent: Friday, August 31, 2012 8:43:46 AM
> Subject: Re: [Mzmine-devel] request
> G'day,
> > I would like to do baseline correction in MZmine but I receive this
> error massage ' base line
> > correction requires R but it could not be loaded<could not start R.
> Please check if R is installed
> > and path to the libraries is set properly in the startMmine
> > script.>
> R and java are installed on
> > my computer and path to the libraries is set correctly (as it is
> > said
> in the manual). I appreciate it
> > if you could help me with this matter.
> Dorsa, I wrote the baseline correction module.
> I've seen similar problems before and it's usually related to how
> you've
> configured R in your startMZmine_Windows.bat file (assuming you're
> running MZmine in Windows?)
> Could you please share your your settings for:
> R_HOME
> R_LIBS_USER
> Then could you please run R and tell us the output to the following
> commands:
> .libPaths()
> .packageDescription("xcms")
> Thanks,
> Chris.
> This message may contain confidential information. If you are not the
> designated recipient, please notify the sender immediately, and
> delete the original and any copies. Any use of the message by you is
> prohibited.
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond.
> Discussions
> will include endpoint security, mobile security and the latest in
> malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> _______________________________________________
> Mzmine-devel mailing list
> Mzmine-devel@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
--
==================================================================
Geert Goeminne, Ing.
Tel:+32 (0)9 331 38 79 or (0)9 331 38 85
fax:+32 (0)9 331 38 09
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
ge...@psb.vib-ugent.be http://www.psb.vib-ugent.be
==================================================================
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
