Hi! I'm having the same issue w heatmaps and baseline correction. Any help
would be greatly appreciated.
Here are the R paths from the start script:
rem Set R environment variables.
set R_HOME=C:\Program Files\R\R-2.15.2
set R_SHARE_DIR=%R_HOME%\share
set R_INCLUDE_DIR=%R_HOME%\include
set R_DOC_DIR=%R_HOME%\doc
set R_LIBS_USER=%USERPROFILE%\Documents\R\win-library\2.15.2
> .libPaths()
[1] "C:/Program Files/R/R-2.15.2/library"
> packageDescription("xcms")
Package: xcms
Version: 1.34.0
Date: 2012-08-30
Title: LC/MS and GC/MS Data Analysis
Author: Colin A. Smith <[email protected]>, Ralf Tautenhahn
<[email protected]>, Steffen Neumann
<[email protected]>, Paul Benton
<[email protected]>
Maintainer: Ralf Tautenhahn <[email protected]>
Depends: R (>= 1.9.0), methods, mzR (>= 1.1.6)
Suggests: faahKO, msdata, ncdf, multtest, rgl, MassSpecWavelet (>=
1.5.2), RANN, snow, RUnit
Enhances: Rgraphviz, XML, KEGGSOAP
Description: Framework for processing and visualization of
chromatographically separated and single-spectra mass spectral
data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML
files. Preprocesses data for high-throughput, untargeted
analyte profiling.
License: GPL (>= 2)
URL: http://metlin.scripps.edu/download/
biocViews: MassSpectrometry, Metabolomics
Packaged: 2012-10-02 06:30:59 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-02 13:26:44 UTC; windows
-- File: C:/Program Files/R/R-2.15.2/library/xcms/Meta/package.r
Thanks!
Vincent
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