Hi Raghavendra,

I am sorry but I have no idea what might be causing this problem... This is not 
caused by MZmine code, but somewhere between Java and R.
What is your HEAP_SIZE setting?
Can you try using a different version of R?

Tomas


On Sep 20, 2012, at 1:04 AM, Raghavendra Gunnaiah 
<raghavendra.gunna...@mail.mcgill.ca<mailto:raghavendra.gunna...@mail.mcgill.ca>>
 wrote:

Hi Tomas,
XCMS runs correctly as standalone application in R.
I also tried re installing. Deconvolution runs correctly for the first 4 files 
(Quad core). But it shows error when it goes to second set of four files. 
Please have a look at the attached error files
I appreciate your advice
regards

Raghavendra Gunnaiah
Ph.D Scholar
R1-013,Department of Plant Science
McGill University Macdonald Campus
21,111 Lakeshore Road
Ste. Anne de Bellevue, QC H9X 3V9
________________________________
From: Tomas Pluskal [plus...@oist.jp<mailto:plus...@oist.jp>]
Sent: September 9, 2012 10:30 PM
To: Developer discussion
Cc: Raghavendra Gunnaiah
Subject: Re: [Mzmine-devel] Java run time error

Hi Raghavendra,

The problem must be somewhere in the connection between MZmine and R.
I would suggest to try to run XCMS as a standalone application to see if the 
error occurs, too.

Best regards,

Tomas


On Sep 10, 2012, at 6:19 AM, Raghavendra Gunnaiah 
<raghavendra.gunna...@mail.mcgill.ca<mailto:raghavendra.gunna...@mail.mcgill.ca><mailto:raghavendra.gunna...@mail.mcgill.ca>>
 wrote:

Dear Developers,
I am getting the following error after running four files of deconvolution 
(XCMS)
"java (TM) platform SE binary has stopped working".
I tried unistalling and re installing  different versions of java (1.6.34, 
1.6.35 and 1.7).
Everything goes well until deconvolution. Once it finishes first set of four 
files, I get this error.
I am working on 64 bit system with quad core and 8 gb RAM.
I appreciate your suggestions in overcoming this this error


Raghavendra Gunnaiah
Ph.D Scholar
R1-013,Department of Plant Science
McGill University Macdonald Campus
21,111 Lakeshore Road
Ste. Anne de Bellevue, QC H9X 3V9

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1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
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