OK, schematic looks right now

Large filter caps (> 100uF) by themselves wont solve the spike problem. You 
will need some series inductance (try 100uH), and some lower-value caps 
(0.1uF) in parallel because larger caps dont filter high-frequency noise 
very well. Also be sure to have a series diode from the +12V automobile 
power to protect against reverse-polarity. I recommend a fuse as well. As 
far as what L & C values to use for the filter, the values I guessed at get 
you a corner frequency of a few kHz. You might want to put a scope on your 
car and see what noise you get during engine-idle while the battery is 
charging; I'm guessing the alternator is the biggest source of 
low-frequency noise, but it could also be the ignition system. I've never 
looked; always been curious.

Plan on noisy signals from your sensors; there's all sorts of electrical 
noise under the hood. There's a lot of clever automotive engineers with 
many years of experience who have solved this problem, and hopefully 
published some technical papers.


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