I just downloaded and iinstalled pygr-0.7 on a linux box, I believe successfully.
However, the pygr module seqdb seems to be missing critical classes, such as sequenceFileDB: > daveg@:pygr$ pwd > /usr/local/lib/python2.5/site-packages/pygr > daveg@:pygr$ ls > Data.py cdict.so coordinator.pyc mapping.py > nlmsa_utils.pyc schema.py sequence.py sqlgraph.pyc > Data.pyc classutil.py dbfile.py mapping.pyc > parse_blast.py schema.pyc sequence.pyc xnestedlist.py > __init__.py classutil.pyc dbfile.pyc nestedlist.py > parse_blast.pyc seqdb.py sequtil.py xnestedlist.pyc > __init__.pyc cnestedlist.so graphquery.py nestedlist.pyc > poa.py seqdb.pyc sequtil.pyc > apps coordinator.py graphquery.pyc nlmsa_utils.py > poa.pyc seqfmt.so sqlgraph.py > daveg@:pygr$ grep -i sequencefiledb * > daveg@:pygr$ "from pygr.seqdb import *" under python 2.5 doesn't seem to find this class either, though it finds things like BlastDB, etc. Am I missing something? David M. Goodstein Joint Genome Institute / Lawrence Berkeley National Lab Center for Integrative Genomics / UCBerkeley http://www.phytozome.net --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
