On Mon, 8 Jun 2009 21:31:42 -0700 Christopher Lee <[email protected]> wrote:
> that is already done. I got rid of the last few references to > pygr.Data from the reference docs. Unless someone has something > that must urgently go into this alpha, I will tag v0.8.0.alpha2. > Then we should generate and upload packages for our target platforms. Unfortunately it turns out we still haven't got rid of problems with BLAST tests... Since you fixed the bug I introduced into relaxed tests, Blast_Test.test_multiblast() has been failing again. It would, as I mentioned earlier, make sense to resolve this before releasing packages. Attached you will find a diff of expected and obtained results. Unfortunately, the problem cannot be solved by simply raising the identity-percentage threshold - while the vast majority of mismatches could indeed be eliminated this way, there are some on the "high" end as well. Moreover, I find the fact some hits are only present in one of the output samples, rather than appearing in both and only differing by the exact value of identity percentage, rather puzzling. What do you think we should do here? -- MS --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
