On Jun 9, 2009, at 7:21 PM, Marek Szuba wrote:
> > Attached you will find a diff of expected and obtained results. > Unfortunately, the problem cannot be solved by simply raising the > identity-percentage threshold - while the vast majority of mismatches > could indeed be eliminated this way, there are some on the "high" end > as well. Moreover, I find the fact some hits are only present in one > of > the output samples, rather than appearing in both and only differing > by > the exact value of identity percentage, rather puzzling. What do you > think we should do here? Hi Marek, The first question is whether the difference is simply due to differing BLAST results on the different platforms. Pygr cannot do anything to "fix" BLAST's output; Pygr's job is simply to report accurately whatever BLAST returned. Please check whether the test is failing on some platforms due to differences in BLAST output on those platforms. If that is the case, then you need to restrict your "relaxed" test to results that are consistent across platforms. On the other hand, if the differences are due to Pygr misbehaving and misreporting the BLAST results on those platforms, then we need to fix the bug. -- Chris --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
