Hello again, Chris and I talked about BLAST tests again today. It seems that a lot of problems with these tests can be fixed by setting mergeMost=True while reformatting BLAST output, as this significantly reduces gapping. Of course switching this option on requires updating all existing "correct" data sets... You can find the necessary code changes in my blast_mergeMost branch:
http://github.com/mkszuba/pygr/commit/95978b118269b3c44216d5396b31ddae368b30ce Please have a look at this, in particular whether this works correctly with older BLAST versions (I use 2.2.20, i.e. the latest official one). If it does and the code in question can make it into master, I think we're ready for tagging the second alpha and releasing packages. -- MS --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
