Hi John, Please be aware that there is a difference between a python script that allows you to define some functionality you can use in PyMOL (usually with a .py ending), and a script that will read coordinates and do some PyMOL stuff (which I usually apply a .pml ending).
So, what I think is happening is that you have a python script that defines a function in PyMOL. But you don't use the function afterwards to actually make something appear on the screen. Alternatively you have a script with proper PyMOL commands, but that kind of scripts you need to "run" by typing "@myscript.pml" on the command line. Don't know how to do that from the GUI. I think that http://www.pymolwiki.org/index.php/LoadDir should give you an idea of what I am talking about. Hope this helps. Regards, Folmer On 6 February 2010 09:59, Jhon Thomas <jhon1.tho...@gmail.com> wrote: > Hello all > > I am novice to the crystallography and i have a very little idea of the > programming and scripting. I would like to run some python script which is > already available on the "pymol wiki".Whenevr i run the script file the > image never appreas. This is the way i following the path. > > 1). copy the script in file with extension.py for example. draw_line.py. > 2). Then i go in the File drop down in pymol GUI and select the "run" > option. > 3). select the file which i want to run. for example. draw_line.py > > The image of line never appears on the screen. pymol doesnot show any syntax > or any kind of error. Where i am making a mistake or any thing which is not > being done.or any other way to run the script. I am using the pymol version > 0.99rc 6. I will appreciate the help. > > Thanks in advance > > john > > > ------------------------------------------------------------------------------ > The Planet: dedicated and managed hosting, cloud storage, colocation > Stay online with enterprise data centers and the best network in the > business > Choose flexible plans and management services without long-term contracts > Personal 24x7 support from experience hosting pros just a phone call away. > http://p.sf.net/sfu/theplanet-com > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ The Planet: dedicated and managed hosting, cloud storage, colocation Stay online with enterprise data centers and the best network in the business Choose flexible plans and management services without long-term contracts Personal 24x7 support from experience hosting pros just a phone call away. http://p.sf.net/sfu/theplanet-com _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
