Sing, if there is no receptor listed you probably didn't generate one. You can do that on the "Generate Receptor" page.
-Daniel On Friday 19 February 2010 07:13:58 pm Kin Sing Stephen Lee wrote: > Dear all, > > Sorry I fixed the prepare_ligand4.py problem. However, when I try to > do the autodock in the plugin, the plugin cannot recognize the > receptor so there is no choice available in the receptor in the > docking page. If I click autogrid or autodock, the program shows no > response. Is there any setting I could check and fix it? > > Thank you very much > > Sing > > On Feb 19, 2010, at 9:33 AM, pymol-users-requ...@lists.sourceforge.net > > wrote: > > Send PyMOL-users mailing list submissions to > > pymol-users@lists.sourceforge.net > > > > To subscribe or unsubscribe via the World Wide Web, visit > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > or, via email, send a message with subject or body 'help' to > > pymol-users-requ...@lists.sourceforge.net > > > > You can reach the person managing the list at > > pymol-users-ow...@lists.sourceforge.net > > > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of PyMOL-users digest..." > > > > > > Today's Topics: > > > > 1. Re: coordinate systems of pymol and povray (Tsjerk Wassenaar) > > 2. FreeMOL (Jason Vertrees) > > 3. Re: PyMOL-users Digest, Vol 45, Issue 9 (Kin Sing Stephen Lee) > > 4. Save movie not working (Kent Rossman) > > > > > > ---------------------------------------------------------------------- > > > > Message: 1 > > Date: Thu, 18 Feb 2010 21:42:39 +0100 > > From: Tsjerk Wassenaar <tsje...@gmail.com> > > Subject: Re: [PyMOL] coordinate systems of pymol and povray > > To: gabriela.schlau-co...@alumni.brown.edu, pymol-users > > <pymol-users@lists.sourceforge.net> > > Message-ID: > > <8ff898151002181242o50721274q14324f2a14209...@mail.gmail.com> > > Content-Type: text/plain; charset="iso-8859-1" > > > > Hi Gabriela, > > > > If you only want to get the molecule back in view and rotate/translate > > it to your liking, you can use commands like: > > > > #declare Protein = union { #include "protein.inc" } > > #declare Center = (min_extent(Protein)+max_extent(Protein))/2; > > object { Protein translate -Center } > > > > If you want to preserve the view you had in Pymol, you'll need > > something more. For this purpose I wrote a set of POV-Ray macros, > > which are attached. For this to work, you have to save the view from > > get_view(). If you used the (better ;)) second version of make_pov > > from the wiki, the view is already saved in the pov-ray file. Place > > the macro file somewhere where POV-Ray can find it, and uncomment the > > section in the .pov file starting with "Uncomment the following > > lines" :) Now, if you want to add objects to your scene that you have > > defined based on the coordinates in the pdb file, you can use > > something like: > > > > // This draws a sphere of radius 1 at the origin of your .pdb > > coordinate system > > sphere { 0, 1 SET_PYMOL_VIEW( PYMOL_VIEW )) } > > > > For more extensive information, read the first section of the file. If > > things are still unclear, feel free to contact me. And if you find > > that you've managed to do really cool stuff with it, please let me > > know :) > > > > > > Hope it helps, > > > > Tsjerk > > > > On Wed, Feb 17, 2010 at 5:07 PM, Gabriela Schlau-Cohen > > > > <gsad...@hotmail.com> wrote: > >> Hi all, > >> > >> I am trying to load a pymol graphic into povray and then add on > >> geometric > >> objects.? I exported and loaded the molecular model from pymol > >> successfully > >> using the make_pov.py script from the wiki. ?I can then copy and > >> paste that > >> file into povray to generate the molecules through povray. ?Then, > >> when I > >> save the object in pymol to get the molecular coordinates, the > >> coordinates > >> are in a different system. > >> Can someone tell me how to get the molecular coordinates and a > >> povray file > >> in the same coordinate system? > >> Thanks, > >> Gabriela > >> ________________________________ > >> Hotmail: Trusted email with powerful SPAM protection. Sign up now. > >> ------------------------------------------------------------------------ > >>------ Download Intel? Parallel Studio Eval > >> Try the new software tools for yourself. Speed compiling, find bugs > >> proactively, and fine-tune applications for parallel performance. > >> See why Intel Parallel Studio got high marks during beta. > >> http://p.sf.net/sfu/intel-sw-dev > >> _______________________________________________ > >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > -- > > Tsjerk A. Wassenaar, Ph.D. > > > > Computational Chemist > > Medicinal Chemist > > Neuropharmacologist > > -------------- next part -------------- > > A non-text attachment was scrubbed... > > Name: pymolmacro.inc.gz > > Type: application/x-gzip > > Size: 2390 bytes > > Desc: not available > > > > ------------------------------ > > > > Message: 2 > > Date: Thu, 18 Feb 2010 16:36:40 -0500 > > From: Jason Vertrees <jason.vertr...@schrodinger.com> > > Subject: [PyMOL] FreeMOL > > To: pymol-users@lists.sourceforge.net > > Message-ID: > > <79558d781002181336x4216e157w7181f92f24cbd...@mail.gmail.com> > > Content-Type: text/plain; charset=ISO-8859-1 > > > > PyMOLers, > > > > The FreeMOL website is back up as it was before (http://freemol.org). > > FreeMOL is still open-source, based off the original bioinformatics > > project. The only difference is the location of the webserver: it is > > now running from a Schrodinger server to give me better access (again, > > Warren's servers only had FTP access, we now have ssh). > > > > Please let me know if anything's missing. > > > > Thanks for being patient, > > > > -- Jason > > > > -- > > Jason Vertrees, PhD > > PyMOL Product Manager > > Schrodinger, LLC > > > > (e) jason.vertr...@schrodinger.com > > (o) +1 (603) 374-7120 > > > > > > > > ------------------------------ > > > > Message: 3 > > Date: Fri, 19 Feb 2010 01:37:24 -0800 > > From: Kin Sing Stephen Lee <leek...@msu.edu> > > Subject: Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 9 > > To: pymol-users@lists.sourceforge.net > > Message-ID: <23b94f8e-04b7-4718-8758-90b247c5d...@msu.edu> > > Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes > > > > Thank you Daniel, > > > > I finally found the Autodock tool path in Mac however, i got another > > error message: "ImportError: No module named MolKit" Is there any > > solution for this in Mac? > > > > Thank you very much > > > > Sing > > > > On Feb 18, 2010, at 10:56 AM, pymol-users- > > > > requ...@lists.sourceforge.net wrote: > >> Send PyMOL-users mailing list submissions to > >> pymol-users@lists.sourceforge.net > >> > >> To subscribe or unsubscribe via the World Wide Web, visit > >> https://lists.sourceforge.net/lists/listinfo/pymol-users > >> or, via email, send a message with subject or body 'help' to > >> pymol-users-requ...@lists.sourceforge.net > >> > >> You can reach the person managing the list at > >> pymol-users-ow...@lists.sourceforge.net > >> > >> When replying, please edit your Subject line so it is more specific > >> than "Re: Contents of PyMOL-users digest..." > >> > >> > >> Today's Topics: > >> > >> 1. Autodock plugin (Kin Sing Stephen Lee) > >> 2. Re: Autodock plugin (Daniel Seeliger) > >> 3. Update & Submitting Bugs (Jason Vertrees) > >> 4. Re: Update & Submitting Bugs (Christoph Gohlke) > >> 5. Re: Update & Submitting Bugs (Jason Vertrees) > >> 6. Re: Update & Submitting Bugs (Christoph Gohlke) > >> 7. Regarding the Control panel in pymol (phani ghanakota) > >> 8. Re: Regarding the Control panel in pymol (Jason Vertrees) > >> 9. coordinate systems of pymol and povray (Gabriela Schlau-Cohen) > >> > >> > >> ---------------------------------------------------------------------- > >> > >> Message: 1 > >> Date: Tue, 16 Feb 2010 11:06:40 -0800 > >> From: Kin Sing Stephen Lee <leek...@msu.edu> > >> Subject: [PyMOL] Autodock plugin > >> To: "pymol-users@lists.sourceforge.net" > >> <pymol-users@lists.sourceforge.net> > >> Message-ID: <333eebd7-7c78-48d5-90ae-ff9907837...@msu.edu> > >> Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes > >> > >> Dear all, > >> > >> This is the first time for me to use the autodock plugin and I have > >> some simple questions. I'm using Macbook Pro (OS X v 10.5 - > >> leopard). Autodock and autodock tools run fine in the X11 terminal. > >> In the autodock plugin, I need to put in the autodock tool program > >> path,so I put in the path where I installed the autodock tool (under > >> applications folder). When I tried to prepare my receptor and ligand > >> file, the plugin cannot find the autodock tools > >> (prepare_receptor4.py > >> as well as prepare_ligand4.py) so I am wondering where I can find the > >> autodock tools program path or is it possible to use the plugin in > >> mac? > >> > >> Thank you very much > >> > >> Sing > >> > >> > >> > >> > >> ------------------------------ > >> > >> Message: 2 > >> Date: Tue, 16 Feb 2010 20:26:00 +0100 > >> From: Daniel Seeliger <dsee...@gwdg.de> > >> Subject: Re: [PyMOL] Autodock plugin > >> To: pymol-users@lists.sourceforge.net > >> Message-ID: <201002162026.00620.dsee...@gwdg.de> > >> Content-Type: Text/Plain; charset="iso-8859-1" > >> > >> Hi Sing, > >> > >> take a look into > >> ~/.ADplugin/pymol_autodock_plugin.conf > >> and set the path to the autodocktools scripts correctly. Then the > >> plugin > >> should find them. > >> > >> Cheers, > >> Daniel > >> > >> On Tuesday 16 February 2010 08:06:40 pm Kin Sing Stephen Lee wrote: > >>> Dear all, > >>> > >>> This is the first time for me to use the autodock plugin and I have > >>> some simple questions. I'm using Macbook Pro (OS X v 10.5 - > >>> leopard). Autodock and autodock tools run fine in the X11 terminal. > >>> In the autodock plugin, I need to put in the autodock tool program > >>> path,so I put in the path where I installed the autodock tool (under > >>> applications folder). When I tried to prepare my receptor and > >>> ligand > >>> file, the plugin cannot find the autodock tools > >>> (prepare_receptor4.py > >>> as well as prepare_ligand4.py) so I am wondering where I can find > >>> the > >>> autodock tools program path or is it possible to use the plugin in > >>> mac? > >>> > >>> Thank you very much > >>> > >>> Sing > >>> > >>> > >>> ----------------------------------------------------------------------- > >>>---- --- SOLARIS 10 is the OS for Data Centers - provides features such > >>> as > >>> DTrace, Predictive Self Healing and Award Winning ZFS. Get Solaris > >>> 10 NOW > >>> http://p.sf.net/sfu/solaris-dev2dev > >>> _______________________________________________ > >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> -- > >> Dr. Daniel Seeliger > >> Computational Biomolecular Dynamics Group > >> Max-Planck-Institute for Biophysical Chemistry > >> Tel. +49 (0) 551-201-2310 > >> http://wwwuser.gwdg.de/~dseelig > >> > >> > >> > >> ------------------------------ > >> > >> Message: 3 > >> Date: Wed, 17 Feb 2010 14:35:13 -0500 > >> From: Jason Vertrees <jason.vertr...@schrodinger.com> > >> Subject: [PyMOL] Update & Submitting Bugs > >> To: pymol-users@lists.sourceforge.net > >> Message-ID: > >> <79558d781002171135l2f74c6cax60c357bc8e4b...@mail.gmail.com> > >> Content-Type: text/plain; charset=ISO-8859-1 > >> > >> PyMOLers, > >> > >> * In order to keep all bugs in one place please email your bugs to > >> h...@schrodinger.com instead of using the SourceForge tracker. > >> Schrodinger has a very nice bug tracker that we use; and, in the end > >> it's just better to not duplicate effort. > >> > >> * I started pushing small changes into the open-source code and more > >> are coming. Please file bugs to the aforementioned address. > >> > >> * CEAlign is working on all my versions of PyMOL, so I'll be pushing > >> that to the open-source soon. > >> > >> * We now have another server for FreeMOL (which maps right back to > >> http://freemol.org/) and we also have control over the FreeMOL > >> project. When I get back to my office (where the files live) I'll > >> update FreeMOL. > >> > >> Thanks, > >> > >> -- Jason > >> > >> -- > >> Jason Vertrees, PhD > >> PyMOL Product Manager > >> Schrodinger, LLC > >> > >> (e) jason.vertr...@schrodinger.com > >> (o) +1 (603) 374-7120 > >> > >> > >> > >> ------------------------------ > >> > >> Message: 4 > >> Date: Wed, 17 Feb 2010 21:15:06 -0800 > >> From: Christoph Gohlke <cgoh...@uci.edu> > >> Subject: Re: [PyMOL] Update & Submitting Bugs > >> To: pymol-users@lists.sourceforge.net > >> Message-ID: <4b7cccda.90...@uci.edu> > >> Content-Type: text/plain; charset=ISO-8859-1 > >> > >> What is the URL of the Schrodinger bug tracker? The PyMOL SourceForge > >> tracker is disabled. > >> > >> Thanks, > >> > >> Christoph > >> > >> On 2/17/2010 11:35 AM, Jason Vertrees wrote: > >>> PyMOLers, > >>> > >>> * In order to keep all bugs in one place please email your bugs to > >>> h...@schrodinger.com instead of using the SourceForge tracker. > >>> Schrodinger has a very nice bug tracker that we use; and, in the end > >>> it's just better to not duplicate effort. > >>> > >>> * I started pushing small changes into the open-source code and more > >>> are coming. Please file bugs to the aforementioned address. > >>> > >>> * CEAlign is working on all my versions of PyMOL, so I'll be pushing > >>> that to the open-source soon. > >>> > >>> * We now have another server for FreeMOL (which maps right back to > >>> http://freemol.org/) and we also have control over the FreeMOL > >>> project. When I get back to my office (where the files live) I'll > >>> update FreeMOL. > >>> > >>> Thanks, > >>> > >>> -- Jason > >> > >> ------------------------------ > >> > >> Message: 5 > >> Date: Thu, 18 Feb 2010 00:30:49 -0500 > >> From: Jason Vertrees <jason.vertr...@schrodinger.com> > >> Subject: Re: [PyMOL] Update & Submitting Bugs > >> To: Christoph Gohlke <cgoh...@uci.edu> > >> Cc: pymol-users@lists.sourceforge.net > >> Message-ID: > >> <79558d781002172130y46763880j59563bd7a908c...@mail.gmail.com> > >> Content-Type: text/plain; charset=ISO-8859-1 > >> > >> Christoph, > >> > >> Schrodinger's tracker is internal only. To submit a bug, just email > >> your bugs to h...@schrodinger.com (for faster turnaround put > >> something > >> like "PyMOL Bug" in the title). They are immediately filed and > >> assigned to me. > >> > >> I chose to turn off the SourceForge tracker because I do not want to > >> miss bugs or spend my time duplicating tracking efforts, as I was. > >> > >> Thanks, > >> > >> -- Jason > >> > >> On Thu, Feb 18, 2010 at 12:15 AM, Christoph Gohlke <cgoh...@uci.edu> > >> > >> wrote: > >>> What is the URL of the Schrodinger bug tracker? The PyMOL > >>> SourceForge > >>> tracker is disabled. > >>> > >>> Thanks, > >>> > >>> Christoph > >>> > >>> On 2/17/2010 11:35 AM, Jason Vertrees wrote: > >>>> PyMOLers, > >>>> > >>>> * In order to keep all bugs in one place please email your bugs to > >>>> h...@schrodinger.com instead of using the SourceForge tracker. > >>>> Schrodinger has a very nice bug tracker that we use; and, in the > >>>> end > >>>> it's just better to not duplicate effort. > >>>> > >>>> * I started pushing small changes into the open-source code and > >>>> more > >>>> are coming. ?Please file bugs to the aforementioned address. > >>>> > >>>> * CEAlign is working on all my versions of PyMOL, so I'll be > >>>> pushing > >>>> that to the open-source soon. > >>>> > >>>> * We now have another server for FreeMOL (which maps right back to > >>>> http://freemol.org/) and we also have control over the FreeMOL > >>>> project. ?When I get back to my office (where the files live) I'll > >>>> update FreeMOL. > >>>> > >>>> Thanks, > >>>> > >>>> -- Jason > >>> > >>> ----------------------------------------------------------------------- > >>>------- Download Intel® Parallel Studio Eval > >>> Try the new software tools for yourself. Speed compiling, find bugs > >>> proactively, and fine-tune applications for parallel performance. > >>> See why Intel Parallel Studio got high marks during beta. > >>> http://p.sf.net/sfu/intel-sw-dev > >>> _______________________________________________ > >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > >> -- > >> Jason Vertrees, PhD > >> PyMOL Product Manager > >> Schrodinger, LLC > >> > >> (e) jason.vertr...@schrodinger.com > >> (o) +1 (603) 374-7120 > >> > >> > >> > >> ------------------------------ > >> > >> Message: 6 > >> Date: Wed, 17 Feb 2010 23:23:26 -0800 > >> From: Christoph Gohlke <cgoh...@uci.edu> > >> Subject: Re: [PyMOL] Update & Submitting Bugs > >> To: Jason Vertrees <jason.vertr...@schrodinger.com> > >> Cc: pymol-users@lists.sourceforge.net > >> Message-ID: <4b7ceaee.4000...@uci.edu> > >> Content-Type: text/plain; charset=ISO-8859-1 > >> > >> Good. Thanks for keeping PyMOL development going. > >> > >> Christoph > >> > >> On 2/17/2010 9:30 PM, Jason Vertrees wrote: > >>> Christoph, > >>> > >>> Schrodinger's tracker is internal only. To submit a bug, just email > >>> your bugs to h...@schrodinger.com (for faster turnaround put > >>> something > >>> like "PyMOL Bug" in the title). They are immediately filed and > >>> assigned to me. > >>> > >>> I chose to turn off the SourceForge tracker because I do not want to > >>> miss bugs or spend my time duplicating tracking efforts, as I was. > >>> > >>> Thanks, > >>> > >>> -- Jason > >>> > >>> On Thu, Feb 18, 2010 at 12:15 AM, Christoph Gohlke > >>> > >>> <cgoh...@uci.edu> wrote: > >>>> What is the URL of the Schrodinger bug tracker? The PyMOL > >>>> SourceForge > >>>> tracker is disabled. > >>>> > >>>> Thanks, > >>>> > >>>> Christoph > >>>> > >>>> On 2/17/2010 11:35 AM, Jason Vertrees wrote: > >>>>> PyMOLers, > >>>>> > >>>>> * In order to keep all bugs in one place please email your bugs to > >>>>> h...@schrodinger.com instead of using the SourceForge tracker. > >>>>> Schrodinger has a very nice bug tracker that we use; and, in the > >>>>> end > >>>>> it's just better to not duplicate effort. > >>>>> > >>>>> * I started pushing small changes into the open-source code and > >>>>> more > >>>>> are coming. Please file bugs to the aforementioned address. > >>>>> > >>>>> * CEAlign is working on all my versions of PyMOL, so I'll be > >>>>> pushing > >>>>> that to the open-source soon. > >>>>> > >>>>> * We now have another server for FreeMOL (which maps right back to > >>>>> http://freemol.org/) and we also have control over the FreeMOL > >>>>> project. When I get back to my office (where the files live) I'll > >>>>> update FreeMOL. > >>>>> > >>>>> Thanks, > >>>>> > >>>>> -- Jason > >> > >> ------------------------------ > >> > >> Message: 7 > >> Date: Thu, 18 Feb 2010 09:30:34 -0800 (PST) > >> From: phani ghanakota <gphanionl...@yahoo.com> > >> Subject: [PyMOL] Regarding the Control panel in pymol > >> To: pymol-users@lists.sourceforge.net > >> Message-ID: <820965.90400...@web110014.mail.gq1.yahoo.com> > >> Content-Type: text/plain; charset="us-ascii" > >> > >> Hi, > >> > >> Is there a way to toggle on and off the control panel using a > >> command. So that viewing in the full screen mode would be more > >> pleasant. > >> > >> Thanks in advance. > >> > >> > >> > >> > >> -------------- next part -------------- > >> An HTML attachment was scrubbed... > >> > >> ------------------------------ > >> > >> Message: 8 > >> Date: Thu, 18 Feb 2010 13:54:40 -0500 > >> From: Jason Vertrees <jason.vertr...@schrodinger.com> > >> Subject: Re: [PyMOL] Regarding the Control panel in pymol > >> To: phani ghanakota <gphanionl...@yahoo.com> > >> Cc: pymol-users@lists.sourceforge.net > >> Message-ID: > >> <79558d781002181054o70d34b6h803e7d385c88e...@mail.gmail.com> > >> Content-Type: text/plain; charset=ISO-8859-1 > >> > >> On Thu, Feb 18, 2010 at 12:30 PM, phani ghanakota > >> > >> <gphanionl...@yahoo.com> wrote: > >>> Is there a way to toggle on and off the control panel using a > >>> command. So that viewing in the full screen mode would be more > >>> pleasant. > >> > >> Phani, > >> > >> # turns off the internal UI > >> set internal_gui, 0 > >> > >> # make PyMOL fullscreen; works on Windows and Mac; some issues on > >> Linux > >> fullscreen > >> > >> -- Jason > >> > >> -- > >> Jason Vertrees, PhD > >> PyMOL Product Manager > >> Schrodinger, LLC > >> > >> (e) jason.vertr...@schrodinger.com > >> (o) +1 (603) 374-7120 > >> > >> > >> > >> ------------------------------ > >> > >> Message: 9 > >> Date: Wed, 17 Feb 2010 16:07:05 +0000 > >> From: Gabriela Schlau-Cohen <gsad...@hotmail.com> > >> Subject: [PyMOL] coordinate systems of pymol and povray > >> To: <pymol-users@lists.sourceforge.net> > >> Message-ID: <snt109-w258456a7a08f0be0bf5c52a4...@phx.gbl> > >> Content-Type: text/plain; charset="iso-8859-1" > >> > >> > >> Hi all, > >> > >> I am trying to load a pymol graphic into povray and then add on > >> geometric objects. I exported and loaded the molecular model from > >> pymol successfully using the make_pov.py script from the wiki. I > >> can then copy and paste that file into povray to generate the > >> molecules through povray. Then, when I save the object in pymol to > >> get the molecular coordinates, the coordinates are in a different > >> system. > >> Can someone tell me how to get the molecular coordinates and a > >> povray file in the same coordinate system? > >> Thanks,Gabriela > >> _________________________________________________________________ > >> Hotmail: Trusted email with powerful SPAM protection. > >> http://clk.atdmt.com/GBL/go/201469227/direct/01/ > >> -------------- next part -------------- > >> An HTML attachment was scrubbed... > >> > >> ------------------------------ > >> > >> ------------------------------------------------------------------------ > >>------ Download Intel® Parallel Studio Eval > >> Try the new software tools for yourself. Speed compiling, find bugs > >> proactively, and fine-tune applications for parallel performance. > >> See why Intel Parallel Studio got high marks during beta. > >> http://p.sf.net/sfu/intel-sw-dev > >> > >> ------------------------------ > >> > >> _______________________________________________ > >> PyMOL-users mailing list > >> PyMOL-users@lists.sourceforge.net > >> https://lists.sourceforge.net/lists/listinfo/pymol-users > >> > >> > >> End of PyMOL-users Digest, Vol 45, Issue 9 > >> ****************************************** > > > > ------------------------------ > > > > Message: 4 > > Date: Thu, 18 Feb 2010 22:33:14 -0500 > > From: "Kent Rossman" <kross...@med.unc.edu> > > Subject: [PyMOL] Save movie not working > > To: pymol-users@lists.sourceforge.net > > Message-ID: <4b7e067a.7070...@med.unc.edu> > > Content-Type: text/plain; charset=iso-8859-1; format=flowed > > > > Hi Delano, > > > > When I try to save an MPEG from the save movie menu, pymol works on > > writing out the movie, then i get an error that says mpeg_encode.exe > > has > > encounteres a problem and has to close. A file is written with 0 > > bytes. There was also an error that mpeg_encode was being used by > > another file/program...I think. Can you help? > > > > Thanks, > > kr > > > > -- > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > Kent Rossman, Ph.D. > > Research Assistant Professor > > Department of Pharmacology > > Lineberger Comprehensive Cancer Center > > UNC-Chapel Hill, CB 7295 > > Chapel Hill, NC 27599 > > > > Tel: 919-962-1057 > > Fax: 919-966-0162 > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > > > > > > > > > > > > > ------------------------------ > > > > ------------------------------------------------------------------------- > >----- Download Intel® Parallel Studio Eval > > Try the new software tools for yourself. Speed compiling, find bugs > > proactively, and fine-tune applications for parallel performance. > > See why Intel Parallel Studio got high marks during beta. > > http://p.sf.net/sfu/intel-sw-dev > > > > ------------------------------ > > > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > End of PyMOL-users Digest, Vol 45, Issue 10 > > ******************************************* > > --------------------------------------------------------------------------- > --- Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Dr. Daniel Seeliger Computational Biomolecular Dynamics Group Max-Planck-Institute for Biophysical Chemistry Tel. +49 (0) 551-201-2310 http://wwwuser.gwdg.de/~dseelig ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
