Hello Sing, Perhaps going over the basic tutorial will help make things clear:
http://wwwuser.gwdg.de/~dseelig/plugin_tutorial.html Best, Shiven On Fri, Feb 19, 2010 at 1:13 PM, Kin Sing Stephen Lee <s...@chemistry.msu.edu> wrote: > Dear all, > > Sorry I fixed the prepare_ligand4.py problem. However, when I try to > do the autodock in the plugin, the plugin cannot recognize the > receptor so there is no choice available in the receptor in the > docking page. If I click autogrid or autodock, the program shows no > response. Is there any setting I could check and fix it? > > Thank you very much > > Sing > > On Feb 19, 2010, at 9:33 AM, pymol-users-requ...@lists.sourceforge.net > wrote: > >> Send PyMOL-users mailing list submissions to >> pymol-us...@lists.sourceforge.net >> >> To subscribe or unsubscribe via the World Wide Web, visit >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> or, via email, send a message with subject or body 'help' to >> pymol-users-requ...@lists.sourceforge.net >> >> You can reach the person managing the list at >> pymol-users-ow...@lists.sourceforge.net >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of PyMOL-users digest..." >> >> >> Today's Topics: >> >> 1. Re: coordinate systems of pymol and povray (Tsjerk Wassenaar) >> 2. FreeMOL (Jason Vertrees) >> 3. Re: PyMOL-users Digest, Vol 45, Issue 9 (Kin Sing Stephen Lee) >> 4. Save movie not working (Kent Rossman) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Thu, 18 Feb 2010 21:42:39 +0100 >> From: Tsjerk Wassenaar <tsje...@gmail.com> >> Subject: Re: [PyMOL] coordinate systems of pymol and povray >> To: gabriela.schlau-co...@alumni.brown.edu, pymol-users >> <pymol-users@lists.sourceforge.net> >> Message-ID: >> <8ff898151002181242o50721274q14324f2a14209...@mail.gmail.com> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hi Gabriela, >> >> If you only want to get the molecule back in view and rotate/translate >> it to your liking, you can use commands like: >> >> #declare Protein = union { #include "protein.inc" } >> #declare Center = (min_extent(Protein)+max_extent(Protein))/2; >> object { Protein translate -Center } >> >> If you want to preserve the view you had in Pymol, you'll need >> something more. For this purpose I wrote a set of POV-Ray macros, >> which are attached. For this to work, you have to save the view from >> get_view(). If you used the (better ;)) second version of make_pov >> from the wiki, the view is already saved in the pov-ray file. Place >> the macro file somewhere where POV-Ray can find it, and uncomment the >> section in the .pov file starting with "Uncomment the following >> lines" :) Now, if you want to add objects to your scene that you have >> defined based on the coordinates in the pdb file, you can use >> something like: >> >> // This draws a sphere of radius 1 at the origin of your .pdb >> coordinate system >> sphere { 0, 1 SET_PYMOL_VIEW( PYMOL_VIEW )) } >> >> For more extensive information, read the first section of the file. If >> things are still unclear, feel free to contact me. And if you find >> that you've managed to do really cool stuff with it, please let me >> know :) >> >> >> Hope it helps, >> >> Tsjerk >> >> On Wed, Feb 17, 2010 at 5:07 PM, Gabriela Schlau-Cohen >> <gsad...@hotmail.com> wrote: >>> Hi all, >>> >>> I am trying to load a pymol graphic into povray and then add on >>> geometric >>> objects.? I exported and loaded the molecular model from pymol >>> successfully >>> using the make_pov.py script from the wiki. ?I can then copy and >>> paste that >>> file into povray to generate the molecules through povray. ?Then, >>> when I >>> save the object in pymol to get the molecular coordinates, the >>> coordinates >>> are in a different system. >>> Can someone tell me how to get the molecular coordinates and a >>> povray file >>> in the same coordinate system? >>> Thanks, >>> Gabriela >>> ________________________________ >>> Hotmail: Trusted email with powerful SPAM protection. Sign up now. >>> ------------------------------------------------------------------------------ >>> Download Intel? Parallel Studio Eval >>> Try the new software tools for yourself. Speed compiling, find bugs >>> proactively, and fine-tune applications for parallel performance. >>> See why Intel Parallel Studio got high marks during beta. >>> http://p.sf.net/sfu/intel-sw-dev >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> >> >> >> -- >> Tsjerk A. Wassenaar, Ph.D. >> >> Computational Chemist >> Medicinal Chemist >> Neuropharmacologist >> -------------- next part -------------- >> A non-text attachment was scrubbed... >> Name: pymolmacro.inc.gz >> Type: application/x-gzip >> Size: 2390 bytes >> Desc: not available >> >> ------------------------------ >> >> Message: 2 >> Date: Thu, 18 Feb 2010 16:36:40 -0500 >> From: Jason Vertrees <jason.vertr...@schrodinger.com> >> Subject: [PyMOL] FreeMOL >> To: pymol-users@lists.sourceforge.net >> Message-ID: >> <79558d781002181336x4216e157w7181f92f24cbd...@mail.gmail.com> >> Content-Type: text/plain; charset=ISO-8859-1 >> >> PyMOLers, >> >> The FreeMOL website is back up as it was before (http://freemol.org). >> FreeMOL is still open-source, based off the original bioinformatics >> project. The only difference is the location of the webserver: it is >> now running from a Schrodinger server to give me better access (again, >> Warren's servers only had FTP access, we now have ssh). >> >> Please let me know if anything's missing. >> >> Thanks for being patient, >> >> -- Jason >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 >> >> >> >> ------------------------------ >> >> Message: 3 >> Date: Fri, 19 Feb 2010 01:37:24 -0800 >> From: Kin Sing Stephen Lee <leek...@msu.edu> >> Subject: Re: [PyMOL] PyMOL-users Digest, Vol 45, Issue 9 >> To: pymol-users@lists.sourceforge.net >> Message-ID: <23b94f8e-04b7-4718-8758-90b247c5d...@msu.edu> >> Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes >> >> Thank you Daniel, >> >> I finally found the Autodock tool path in Mac however, i got another >> error message: "ImportError: No module named MolKit" Is there any >> solution for this in Mac? >> >> Thank you very much >> >> Sing >> >> On Feb 18, 2010, at 10:56 AM, pymol-users- >> requ...@lists.sourceforge.net wrote: >> >>> Send PyMOL-users mailing list submissions to >>> pymol-us...@lists.sourceforge.net >>> >>> To subscribe or unsubscribe via the World Wide Web, visit >>> https://lists.sourceforge.net/lists/listinfo/pymol-users >>> or, via email, send a message with subject or body 'help' to >>> pymol-users-requ...@lists.sourceforge.net >>> >>> You can reach the person managing the list at >>> pymol-users-ow...@lists.sourceforge.net >>> >>> When replying, please edit your Subject line so it is more specific >>> than "Re: Contents of PyMOL-users digest..." >>> >>> >>> Today's Topics: >>> >>> 1. Autodock plugin (Kin Sing Stephen Lee) >>> 2. Re: Autodock plugin (Daniel Seeliger) >>> 3. Update & Submitting Bugs (Jason Vertrees) >>> 4. Re: Update & Submitting Bugs (Christoph Gohlke) >>> 5. Re: Update & Submitting Bugs (Jason Vertrees) >>> 6. Re: Update & Submitting Bugs (Christoph Gohlke) >>> 7. Regarding the Control panel in pymol (phani ghanakota) >>> 8. Re: Regarding the Control panel in pymol (Jason Vertrees) >>> 9. coordinate systems of pymol and povray (Gabriela Schlau-Cohen) >>> >>> >>> ---------------------------------------------------------------------- >>> >>> Message: 1 >>> Date: Tue, 16 Feb 2010 11:06:40 -0800 >>> From: Kin Sing Stephen Lee <leek...@msu.edu> >>> Subject: [PyMOL] Autodock plugin >>> To: "pymol-users@lists.sourceforge.net" >>> <pymol-users@lists.sourceforge.net> >>> Message-ID: <333eebd7-7c78-48d5-90ae-ff9907837...@msu.edu> >>> Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes >>> >>> Dear all, >>> >>> This is the first time for me to use the autodock plugin and I have >>> some simple questions. I'm using Macbook Pro (OS X v 10.5 - >>> leopard). Autodock and autodock tools run fine in the X11 terminal. >>> In the autodock plugin, I need to put in the autodock tool program >>> path,so I put in the path where I installed the autodock tool (under >>> applications folder). When I tried to prepare my receptor and ligand >>> file, the plugin cannot find the autodock tools >>> (prepare_receptor4.py >>> as well as prepare_ligand4.py) so I am wondering where I can find the >>> autodock tools program path or is it possible to use the plugin in >>> mac? >>> >>> Thank you very much >>> >>> Sing >>> >>> >>> >>> >>> ------------------------------ >>> >>> Message: 2 >>> Date: Tue, 16 Feb 2010 20:26:00 +0100 >>> From: Daniel Seeliger <dsee...@gwdg.de> >>> Subject: Re: [PyMOL] Autodock plugin >>> To: pymol-users@lists.sourceforge.net >>> Message-ID: <201002162026.00620.dsee...@gwdg.de> >>> Content-Type: Text/Plain; charset="iso-8859-1" >>> >>> Hi Sing, >>> >>> take a look into >>> ~/.ADplugin/pymol_autodock_plugin.conf >>> and set the path to the autodocktools scripts correctly. Then the >>> plugin >>> should find them. >>> >>> Cheers, >>> Daniel >>> >>> On Tuesday 16 February 2010 08:06:40 pm Kin Sing Stephen Lee wrote: >>>> Dear all, >>>> >>>> This is the first time for me to use the autodock plugin and I have >>>> some simple questions. I'm using Macbook Pro (OS X v 10.5 - >>>> leopard). Autodock and autodock tools run fine in the X11 terminal. >>>> In the autodock plugin, I need to put in the autodock tool program >>>> path,so I put in the path where I installed the autodock tool (under >>>> applications folder). When I tried to prepare my receptor and >>>> ligand >>>> file, the plugin cannot find the autodock tools >>>> (prepare_receptor4.py >>>> as well as prepare_ligand4.py) so I am wondering where I can find >>>> the >>>> autodock tools program path or is it possible to use the plugin in >>>> mac? >>>> >>>> Thank you very much >>>> >>>> Sing >>>> >>>> >>>> --------------------------------------------------------------------------- >>>> --- SOLARIS 10 is the OS for Data Centers - provides features such >>>> as >>>> DTrace, Predictive Self Healing and Award Winning ZFS. Get Solaris >>>> 10 NOW >>>> http://p.sf.net/sfu/solaris-dev2dev >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>>> >>> >>> -- >>> Dr. Daniel Seeliger >>> Computational Biomolecular Dynamics Group >>> Max-Planck-Institute for Biophysical Chemistry >>> Tel. +49 (0) 551-201-2310 >>> http://wwwuser.gwdg.de/~dseelig >>> >>> >>> >>> ------------------------------ >>> >>> Message: 3 >>> Date: Wed, 17 Feb 2010 14:35:13 -0500 >>> From: Jason Vertrees <jason.vertr...@schrodinger.com> >>> Subject: [PyMOL] Update & Submitting Bugs >>> To: pymol-users@lists.sourceforge.net >>> Message-ID: >>> <79558d781002171135l2f74c6cax60c357bc8e4b...@mail.gmail.com> >>> Content-Type: text/plain; charset=ISO-8859-1 >>> >>> PyMOLers, >>> >>> * In order to keep all bugs in one place please email your bugs to >>> h...@schrodinger.com instead of using the SourceForge tracker. >>> Schrodinger has a very nice bug tracker that we use; and, in the end >>> it's just better to not duplicate effort. >>> >>> * I started pushing small changes into the open-source code and more >>> are coming. Please file bugs to the aforementioned address. >>> >>> * CEAlign is working on all my versions of PyMOL, so I'll be pushing >>> that to the open-source soon. >>> >>> * We now have another server for FreeMOL (which maps right back to >>> http://freemol.org/) and we also have control over the FreeMOL >>> project. When I get back to my office (where the files live) I'll >>> update FreeMOL. >>> >>> Thanks, >>> >>> -- Jason >>> >>> -- >>> Jason Vertrees, PhD >>> PyMOL Product Manager >>> Schrodinger, LLC >>> >>> (e) jason.vertr...@schrodinger.com >>> (o) +1 (603) 374-7120 >>> >>> >>> >>> ------------------------------ >>> >>> Message: 4 >>> Date: Wed, 17 Feb 2010 21:15:06 -0800 >>> From: Christoph Gohlke <cgoh...@uci.edu> >>> Subject: Re: [PyMOL] Update & Submitting Bugs >>> To: pymol-users@lists.sourceforge.net >>> Message-ID: <4b7cccda.90...@uci.edu> >>> Content-Type: text/plain; charset=ISO-8859-1 >>> >>> What is the URL of the Schrodinger bug tracker? The PyMOL SourceForge >>> tracker is disabled. >>> >>> Thanks, >>> >>> Christoph >>> >>> >>> On 2/17/2010 11:35 AM, Jason Vertrees wrote: >>>> PyMOLers, >>>> >>>> * In order to keep all bugs in one place please email your bugs to >>>> h...@schrodinger.com instead of using the SourceForge tracker. >>>> Schrodinger has a very nice bug tracker that we use; and, in the end >>>> it's just better to not duplicate effort. >>>> >>>> * I started pushing small changes into the open-source code and more >>>> are coming. Please file bugs to the aforementioned address. >>>> >>>> * CEAlign is working on all my versions of PyMOL, so I'll be pushing >>>> that to the open-source soon. >>>> >>>> * We now have another server for FreeMOL (which maps right back to >>>> http://freemol.org/) and we also have control over the FreeMOL >>>> project. When I get back to my office (where the files live) I'll >>>> update FreeMOL. >>>> >>>> Thanks, >>>> >>>> -- Jason >>>> >>> >>> >>> >>> ------------------------------ >>> >>> Message: 5 >>> Date: Thu, 18 Feb 2010 00:30:49 -0500 >>> From: Jason Vertrees <jason.vertr...@schrodinger.com> >>> Subject: Re: [PyMOL] Update & Submitting Bugs >>> To: Christoph Gohlke <cgoh...@uci.edu> >>> Cc: pymol-users@lists.sourceforge.net >>> Message-ID: >>> <79558d781002172130y46763880j59563bd7a908c...@mail.gmail.com> >>> Content-Type: text/plain; charset=ISO-8859-1 >>> >>> Christoph, >>> >>> Schrodinger's tracker is internal only. To submit a bug, just email >>> your bugs to h...@schrodinger.com (for faster turnaround put >>> something >>> like "PyMOL Bug" in the title). They are immediately filed and >>> assigned to me. >>> >>> I chose to turn off the SourceForge tracker because I do not want to >>> miss bugs or spend my time duplicating tracking efforts, as I was. >>> >>> Thanks, >>> >>> -- Jason >>> >>> On Thu, Feb 18, 2010 at 12:15 AM, Christoph Gohlke <cgoh...@uci.edu> >>> wrote: >>>> What is the URL of the Schrodinger bug tracker? The PyMOL >>>> SourceForge >>>> tracker is disabled. >>>> >>>> Thanks, >>>> >>>> Christoph >>>> >>>> >>>> On 2/17/2010 11:35 AM, Jason Vertrees wrote: >>>>> PyMOLers, >>>>> >>>>> * In order to keep all bugs in one place please email your bugs to >>>>> h...@schrodinger.com instead of using the SourceForge tracker. >>>>> Schrodinger has a very nice bug tracker that we use; and, in the >>>>> end >>>>> it's just better to not duplicate effort. >>>>> >>>>> * I started pushing small changes into the open-source code and >>>>> more >>>>> are coming. ?Please file bugs to the aforementioned address. >>>>> >>>>> * CEAlign is working on all my versions of PyMOL, so I'll be >>>>> pushing >>>>> that to the open-source soon. >>>>> >>>>> * We now have another server for FreeMOL (which maps right back to >>>>> http://freemol.org/) and we also have control over the FreeMOL >>>>> project. ?When I get back to my office (where the files live) I'll >>>>> update FreeMOL. >>>>> >>>>> Thanks, >>>>> >>>>> -- Jason >>>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> Download Intel® Parallel Studio Eval >>>> Try the new software tools for yourself. Speed compiling, find bugs >>>> proactively, and fine-tune applications for parallel performance. >>>> See why Intel Parallel Studio got high marks during beta. >>>> http://p.sf.net/sfu/intel-sw-dev >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>>> >>> >>> >>> >>> -- >>> Jason Vertrees, PhD >>> PyMOL Product Manager >>> Schrodinger, LLC >>> >>> (e) jason.vertr...@schrodinger.com >>> (o) +1 (603) 374-7120 >>> >>> >>> >>> ------------------------------ >>> >>> Message: 6 >>> Date: Wed, 17 Feb 2010 23:23:26 -0800 >>> From: Christoph Gohlke <cgoh...@uci.edu> >>> Subject: Re: [PyMOL] Update & Submitting Bugs >>> To: Jason Vertrees <jason.vertr...@schrodinger.com> >>> Cc: pymol-users@lists.sourceforge.net >>> Message-ID: <4b7ceaee.4000...@uci.edu> >>> Content-Type: text/plain; charset=ISO-8859-1 >>> >>> Good. Thanks for keeping PyMOL development going. >>> >>> Christoph >>> >>> On 2/17/2010 9:30 PM, Jason Vertrees wrote: >>>> Christoph, >>>> >>>> Schrodinger's tracker is internal only. To submit a bug, just email >>>> your bugs to h...@schrodinger.com (for faster turnaround put >>>> something >>>> like "PyMOL Bug" in the title). They are immediately filed and >>>> assigned to me. >>>> >>>> I chose to turn off the SourceForge tracker because I do not want to >>>> miss bugs or spend my time duplicating tracking efforts, as I was. >>>> >>>> Thanks, >>>> >>>> -- Jason >>>> >>>> On Thu, Feb 18, 2010 at 12:15 AM, Christoph Gohlke >>>> <cgoh...@uci.edu> wrote: >>>>> What is the URL of the Schrodinger bug tracker? The PyMOL >>>>> SourceForge >>>>> tracker is disabled. >>>>> >>>>> Thanks, >>>>> >>>>> Christoph >>>>> >>>>> >>>>> On 2/17/2010 11:35 AM, Jason Vertrees wrote: >>>>>> PyMOLers, >>>>>> >>>>>> * In order to keep all bugs in one place please email your bugs to >>>>>> h...@schrodinger.com instead of using the SourceForge tracker. >>>>>> Schrodinger has a very nice bug tracker that we use; and, in the >>>>>> end >>>>>> it's just better to not duplicate effort. >>>>>> >>>>>> * I started pushing small changes into the open-source code and >>>>>> more >>>>>> are coming. Please file bugs to the aforementioned address. >>>>>> >>>>>> * CEAlign is working on all my versions of PyMOL, so I'll be >>>>>> pushing >>>>>> that to the open-source soon. >>>>>> >>>>>> * We now have another server for FreeMOL (which maps right back to >>>>>> http://freemol.org/) and we also have control over the FreeMOL >>>>>> project. When I get back to my office (where the files live) I'll >>>>>> update FreeMOL. >>>>>> >>>>>> Thanks, >>>>>> >>>>>> -- Jason >>> >>> >>> >>> ------------------------------ >>> >>> Message: 7 >>> Date: Thu, 18 Feb 2010 09:30:34 -0800 (PST) >>> From: phani ghanakota <gphanionl...@yahoo.com> >>> Subject: [PyMOL] Regarding the Control panel in pymol >>> To: pymol-users@lists.sourceforge.net >>> Message-ID: <820965.90400...@web110014.mail.gq1.yahoo.com> >>> Content-Type: text/plain; charset="us-ascii" >>> >>> Hi, >>> >>> Is there a way to toggle on and off the control panel using a >>> command. So that viewing in the full screen mode would be more >>> pleasant. >>> >>> Thanks in advance. >>> >>> >>> >>> >>> -------------- next part -------------- >>> An HTML attachment was scrubbed... >>> >>> ------------------------------ >>> >>> Message: 8 >>> Date: Thu, 18 Feb 2010 13:54:40 -0500 >>> From: Jason Vertrees <jason.vertr...@schrodinger.com> >>> Subject: Re: [PyMOL] Regarding the Control panel in pymol >>> To: phani ghanakota <gphanionl...@yahoo.com> >>> Cc: pymol-users@lists.sourceforge.net >>> Message-ID: >>> <79558d781002181054o70d34b6h803e7d385c88e...@mail.gmail.com> >>> Content-Type: text/plain; charset=ISO-8859-1 >>> >>> On Thu, Feb 18, 2010 at 12:30 PM, phani ghanakota >>> <gphanionl...@yahoo.com> wrote: >>>> Is there a way to toggle on and off the control panel using a >>>> command. So that viewing in the full screen mode would be more >>>> pleasant. >>> >>> Phani, >>> >>> # turns off the internal UI >>> set internal_gui, 0 >>> >>> # make PyMOL fullscreen; works on Windows and Mac; some issues on >>> Linux >>> fullscreen >>> >>> -- Jason >>> >>> -- >>> Jason Vertrees, PhD >>> PyMOL Product Manager >>> Schrodinger, LLC >>> >>> (e) jason.vertr...@schrodinger.com >>> (o) +1 (603) 374-7120 >>> >>> >>> >>> ------------------------------ >>> >>> Message: 9 >>> Date: Wed, 17 Feb 2010 16:07:05 +0000 >>> From: Gabriela Schlau-Cohen <gsad...@hotmail.com> >>> Subject: [PyMOL] coordinate systems of pymol and povray >>> To: <pymol-users@lists.sourceforge.net> >>> Message-ID: <snt109-w258456a7a08f0be0bf5c52a4...@phx.gbl> >>> Content-Type: text/plain; charset="iso-8859-1" >>> >>> >>> Hi all, >>> >>> I am trying to load a pymol graphic into povray and then add on >>> geometric objects. I exported and loaded the molecular model from >>> pymol successfully using the make_pov.py script from the wiki. I >>> can then copy and paste that file into povray to generate the >>> molecules through povray. Then, when I save the object in pymol to >>> get the molecular coordinates, the coordinates are in a different >>> system. >>> Can someone tell me how to get the molecular coordinates and a >>> povray file in the same coordinate system? >>> Thanks,Gabriela >>> _________________________________________________________________ >>> Hotmail: Trusted email with powerful SPAM protection. >>> http://clk.atdmt.com/GBL/go/201469227/direct/01/ >>> -------------- next part -------------- >>> An HTML attachment was scrubbed... >>> >>> ------------------------------ >>> >>> ------------------------------------------------------------------------------ >>> Download Intel® Parallel Studio Eval >>> Try the new software tools for yourself. Speed compiling, find bugs >>> proactively, and fine-tune applications for parallel performance. >>> See why Intel Parallel Studio got high marks during beta. >>> http://p.sf.net/sfu/intel-sw-dev >>> >>> ------------------------------ >>> >>> _______________________________________________ >>> PyMOL-users mailing list >>> PyMOL-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/pymol-users >>> >>> >>> End of PyMOL-users Digest, Vol 45, Issue 9 >>> ****************************************** >>> >> >> >> >> >> ------------------------------ >> >> Message: 4 >> Date: Thu, 18 Feb 2010 22:33:14 -0500 >> From: "Kent Rossman" <kross...@med.unc.edu> >> Subject: [PyMOL] Save movie not working >> To: pymol-users@lists.sourceforge.net >> Message-ID: <4b7e067a.7070...@med.unc.edu> >> Content-Type: text/plain; charset=iso-8859-1; format=flowed >> >> Hi Delano, >> >> When I try to save an MPEG from the save movie menu, pymol works on >> writing out the movie, then i get an error that says mpeg_encode.exe >> has >> encounteres a problem and has to close. A file is written with 0 >> bytes. There was also an error that mpeg_encode was being used by >> another file/program...I think. Can you help? >> >> Thanks, >> kr >> >> -- >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Kent Rossman, Ph.D. >> Research Assistant Professor >> Department of Pharmacology >> Lineberger Comprehensive Cancer Center >> UNC-Chapel Hill, CB 7295 >> Chapel Hill, NC 27599 >> >> Tel: 919-962-1057 >> Fax: 919-966-0162 >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >> >> >> >> >> ------------------------------ >> >> ------------------------------------------------------------------------------ >> Download Intel® Parallel Studio Eval >> Try the new software tools for yourself. Speed compiling, find bugs >> proactively, and fine-tune applications for parallel performance. >> See why Intel Parallel Studio got high marks during beta. >> http://p.sf.net/sfu/intel-sw-dev >> >> ------------------------------ >> >> _______________________________________________ >> PyMOL-users mailing list >> PyMOL-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> >> End of PyMOL-users Digest, Vol 45, Issue 10 >> ******************************************* > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
