After playing around for several days, I have a related question about settings and selections.
I have a surface representation of a protein: whole structure in scene 1 and a zoomed segment in scene 2. I would like to decrease the quality for the first scene, but boost it up for the second one. I have tried scripting this with "set surface_quality, 0, all" in the first scene and "set surface_quality, 1, all" in the second one, but this does not seem to work: when the script is executed, the latter setting takes effect. So, I guess my question is, is it possible to store the quality settings in a Pymol scene? Thank you. Vitaly ----- Original Message ----- From: Jason Vertrees <jason.vertr...@schrodinger.com> Date: Tuesday, April 13, 2010 4:47 pm Subject: Re: [PyMOL] Label size in different scenes To: Vitaly Vostrikov <vvos...@uark.edu> Cc: pymol-users@lists.sourceforge.net > Vitaly, > > Great, glad to hear it. Most PyMOL settings now work on a "per > object" basis. For example, > > set color, red, objectName > > set sphere_scale, 0.71, solvent > > set state, 4, objectName > > Cheers, > > -- Jason > > On Tue, Apr 13, 2010 at 4:00 PM, Vitaly Vostrikov > <vvos...@uark.edu> wrote: > > Jason, > > > > Thank you very much - it worked perfectly! I did not realize it > is possible to apply that for individual objects. > > > > Vitaly > > > > > > ----- Original Message ----- > > From: Jason Vertrees <jason.vertr...@schrodinger.com> > > Date: Tuesday, April 13, 2010 1:58 pm > > Subject: Re: [PyMOL] Label size in different scenes > > To: Vitaly Vostrikov <vvos...@uark.edu> > > Cc: pymol-users@lists.sourceforge.net > > > >> Vitaly, > >> > >> You can set label_size per object: > >> > >> set label_size, -0.35, pseudo1 > >> set label_size, -0.50, pseudo2 > >> > >> I recently ran into similar issues. My solution was to make use of > >> the mdo command. Try "help mdo" and check out the PyMOLWiki page > >> http://www.pymolwiki.org/index.php/Mdo. > >> > >> Cheers, > >> > >> -- Jason > >> > >> On Tue, Apr 13, 2010 at 12:42 PM, Vitaly Vostrikov > >> <vvos...@uark.edu> wrote: > >> > Hello, > >> > > >> > I am learning movie-making in Pymol, and I have a question about > >> label size. > >> > > >> > I have a script with one state and several scenes, and I would > >> like to introduce titles for each scene. I create pseudoatoms for > >> each scene and label them, but because of the different length of > >> text, I would like to have different font size. I thought I could > >> do this just by moving pseudoatom further away, but the font size > >> in the labels seems to be the "final" size that you see on the > >> screen, no matter where a pseudoatom is located. Also, if I > >> understand correctly, it is not possible to use the "set > >> label_size" command for every scene, as the latest executed one > >> will override the previous ones. > >> > > >> > Is there a workaround for this one? > >> > > >> > Thank you, > >> > Vitaly > >> > > >> > --------------------------------------------------------------- > --- > >> ------------ > >> > Download Intel® Parallel Studio Eval > >> > Try the new software tools for yourself. Speed compiling, find > bugs>> > proactively, and fine-tune applications for parallel > performance.>> > See why Intel Parallel Studio got high marks > during beta. > >> > http://p.sf.net/sfu/intel-sw-dev > >> > _______________________________________________ > >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol- > users>> > Archives: http://www.mail-archive.com/pymol- > >> us...@lists.sourceforge.net> > >> > >> > >> > >> -- > >> Jason Vertrees, PhD > >> PyMOL Product Manager > >> Schrodinger, LLC > >> > >> (e) jason.vertr...@schrodinger.com > >> (o) +1 (603) 374-7120 > >> > > > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
