Hi Jason, Can you clarify what URL is being used to download the files from RCSB PDB? I don't think that there was any change regarding those last year.
Andreas On Tue, Mar 22, 2011 at 9:02 AM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > Hi Roger, > >> Has anyone else noticed that Pymol (v 1.3 or 1.4) will no longer fetch data >> from the pdb server? If I issue 'set fetch_host, pdbe' I can fetch data OK, >> but if you 'set fetch_host, pdb' I'm getting a fetch error for any accession >> number. > > I just checked v1.4 and I'm not having any issues with it, which means > the server is up and the paths are still the same. Is it possible you > were having connectivity issues with the PDB server? That's my best > guess because by telling PyMOL to pull the PDBs from the Europan > server, you were able to download. PyMOL v1.3 will most likely not > work, because the PDB changed their PDB paths last year. > > Cheers, > > -- Jason > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > > ------------------------------------------------------------------------------ > Enable your software for Intel(R) Active Management Technology to meet the > growing manageability and security demands of your customers. Businesses > are taking advantage of Intel(R) vPro (TM) technology - will your software > be a part of the solution? Download the Intel(R) Manageability Checker > today! http://p.sf.net/sfu/intel-dev2devmar > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- ----------------------------------------------------------------------- Dr. Andreas Prlic Senior Scientist, RCSB PDB Protein Data Bank University of California, San Diego (+1) 858.246.0526 ----------------------------------------------------------------------- ------------------------------------------------------------------------------ Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro (TM) technology - will your software be a part of the solution? Download the Intel(R) Manageability Checker today! http://p.sf.net/sfu/intel-dev2devmar _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
