Hi Lina, > I don't know how to save a NEW.pdb which based on the old one but with > different coordinate, > do I need reset the axis?
Just go into Editing Mode with the mouse by clicking Mouse > 3 Button Editing. Then, while holding down the SHIFT key, position the molecule as you want it (SHIFT-LEFT will rotate; SHIFT-MIDDLE will translate). Once this is done, you can save the molecule and it will honor the new coordinates. If you want an exact rotation/translation you can use either the rotate command (see "help rotate") or the matrix_copy command if you know the transformation matrix to use. Cheers, -- Jason On Mon, Jul 18, 2011 at 10:49 PM, lina <lina.lastn...@gmail.com> wrote: > Hi, > > I don't know how to save a NEW.pdb which based on the old one but with > different coordinate, > do I need reset the axis? > > I loaded a pdb, after rotate it to an ideal position, at this > situation, I wish the Z-dimension is perpedicular to its this surface > (mainly screen), but fact is that the Z-dimension is other place. > > Thanks for any advice, > > -- > Best Regards, > > lina > > ------------------------------------------------------------------------------ > Magic Quadrant for Content-Aware Data Loss Prevention > Research study explores the data loss prevention market. Includes in-depth > analysis on the changes within the DLP market, and the criteria used to > evaluate the strengths and weaknesses of these DLP solutions. > http://www.accelacomm.com/jaw/sfnl/114/51385063/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Magic Quadrant for Content-Aware Data Loss Prevention Research study explores the data loss prevention market. Includes in-depth analysis on the changes within the DLP market, and the criteria used to evaluate the strengths and weaknesses of these DLP solutions. http://www.accelacomm.com/jaw/sfnl/114/51385063/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
