On Tue, Jul 19, 2011 at 10:29 PM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > Hi Lina, > >> I don't know how to save a NEW.pdb which based on the old one but with >> different coordinate, >> do I need reset the axis? > > Just go into Editing Mode with the mouse by clicking Mouse > 3 Button > Editing. Then, while holding down the SHIFT key, position the > molecule as you want it (SHIFT-LEFT will rotate; SHIFT-MIDDLE will > translate). Once this is done, you can save the molecule and it will > honor the new coordinates.
Thanks, but I still failed to get this new pdb. File -- Save molecular --> I wish the present coordinate will be saved as a new pdb after rotation. sorry. > > If you want an exact rotation/translation you can use either the > rotate command (see "help rotate") or the matrix_copy command if you > know the transformation matrix to use. > > Cheers, > > -- Jason > > > > > On Mon, Jul 18, 2011 at 10:49 PM, lina <lina.lastn...@gmail.com> wrote: >> Hi, >> >> I don't know how to save a NEW.pdb which based on the old one but with >> different coordinate, >> do I need reset the axis? >> >> I loaded a pdb, after rotate it to an ideal position, at this >> situation, I wish the Z-dimension is perpedicular to its this surface >> (mainly screen), but fact is that the Z-dimension is other place. >> >> Thanks for any advice, >> >> -- >> Best Regards, >> >> lina >> >> ------------------------------------------------------------------------------ >> Magic Quadrant for Content-Aware Data Loss Prevention >> Research study explores the data loss prevention market. Includes in-depth >> analysis on the changes within the DLP market, and the criteria used to >> evaluate the strengths and weaknesses of these DLP solutions. >> http://www.accelacomm.com/jaw/sfnl/114/51385063/ >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > -- Best Regards, lina ------------------------------------------------------------------------------ Magic Quadrant for Content-Aware Data Loss Prevention Research study explores the data loss prevention market. Includes in-depth analysis on the changes within the DLP market, and the criteria used to evaluate the strengths and weaknesses of these DLP solutions. http://www.accelacomm.com/jaw/sfnl/114/51385063/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
