Hi Lina, Use the command line:
save newPDB.pdb, rotatedObject Cheers, -- Jason On Tue, Jul 19, 2011 at 11:13 AM, lina <lina.lastn...@gmail.com> wrote: > On Tue, Jul 19, 2011 at 10:29 PM, Jason Vertrees > <jason.vertr...@schrodinger.com> wrote: >> Hi Lina, >> >>> I don't know how to save a NEW.pdb which based on the old one but with >>> different coordinate, >>> do I need reset the axis? >> >> Just go into Editing Mode with the mouse by clicking Mouse > 3 Button >> Editing. Then, while holding down the SHIFT key, position the >> molecule as you want it (SHIFT-LEFT will rotate; SHIFT-MIDDLE will >> translate). Once this is done, you can save the molecule and it will >> honor the new coordinates. > > Thanks, but I still failed to get this new pdb. > > File -- Save molecular --> > > I wish the present coordinate will be saved as a new pdb after rotation. > > sorry. > >> >> If you want an exact rotation/translation you can use either the >> rotate command (see "help rotate") or the matrix_copy command if you >> know the transformation matrix to use. >> >> Cheers, >> >> -- Jason >> >> >> >> >> On Mon, Jul 18, 2011 at 10:49 PM, lina <lina.lastn...@gmail.com> wrote: >>> Hi, >>> >>> I don't know how to save a NEW.pdb which based on the old one but with >>> different coordinate, >>> do I need reset the axis? >>> >>> I loaded a pdb, after rotate it to an ideal position, at this >>> situation, I wish the Z-dimension is perpedicular to its this surface >>> (mainly screen), but fact is that the Z-dimension is other place. >>> >>> Thanks for any advice, >>> >>> -- >>> Best Regards, >>> >>> lina >>> >>> ------------------------------------------------------------------------------ >>> Magic Quadrant for Content-Aware Data Loss Prevention >>> Research study explores the data loss prevention market. Includes in-depth >>> analysis on the changes within the DLP market, and the criteria used to >>> evaluate the strengths and weaknesses of these DLP solutions. >>> http://www.accelacomm.com/jaw/sfnl/114/51385063/ >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 >> > > > > -- > Best Regards, > > lina > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Magic Quadrant for Content-Aware Data Loss Prevention Research study explores the data loss prevention market. Includes in-depth analysis on the changes within the DLP market, and the criteria used to evaluate the strengths and weaknesses of these DLP solutions. http://www.accelacomm.com/jaw/sfnl/114/51385063/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
