Hi Brenton,

 

fetch 4v7y, type=cif 

 

is the command you are looking for

 

All the best

 

Lukas Pravda

---

CEITEC - Central European Institute of Technology

Masaryk University

Brno, Czech Republic

---

 

From: Brenton Horne [mailto:brentonho...@ymail.com] 
Sent: Thursday, March 19, 2015 4:55 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Fetching PDBs; how to load .cifs provided instead of .pdbs

 

Hi,

I have noticed that for some PDBs wwPDB doesn't contain PDB files (e.g., 4V7Y 
<http://www.rcsb.org/pdb/explore/explore.do?structureId=4V7Y> ), but rather 
they have mmCIF files instead and I was wondering if it was possible to get the 
fetch command to fetch these mmCIFs instead of PDBs. Now to be clear, I do 
understand how to load mmCIFs that I have downloaded manually from wwPDB by 
going to File->Open... but I'd like to know how to get PyMOL to fetch these 
files from wwPDB and load them. 

Thanks for your time,
Brenton

------------------------------------------------------------------------------
Dive into the World of Parallel Programming The Go Parallel Website, sponsored
by Intel and developed in partnership with Slashdot Media, is your hub for all
things parallel software development, from weekly thought leadership blogs to
news, videos, case studies, tutorials and more. Take a look and join the 
conversation now. http://goparallel.sourceforge.net/
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

Reply via email to