Hi,
For the version in Ubuntu 14.04 (1.7.0.0) it also defaults to downloading
the structure factors in cif format, instead of the model coordinates, so
I'm not sure this is the right way to do it, or perhaps something changed
between 1.7.0.0 and 1.7.4
Best regards,
Folmer
2015-03-20 10:26 GMT+01:00 Lukáš Pravda <xpra...@ncbr.muni.cz>:
> Which version of PyMOL do you have? Mine is 1.7.4 and it is working just
> fine. So in case you have and older version(< 1.3 I guess) it might not
> work properly.
>
>
>
> Lukas
>
>
>
> *From:* Brenton Horne [mailto:brentonho...@ymail.com]
> *Sent:* Friday, March 20, 2015 12:02 AM
> *To:* Lukáš Pravda
> *Subject:* Re: [PyMOL] Fetching PDBs; how to load .cifs provided instead
> of .pdbs
>
>
>
> Thanks for ya help but I'm afraid this isn't working. See it saves the
> fetched file as .sf format which it then fails to recognize.
>
>
> PyMOL>fetch 4V7Y, type = cif
> please wait ...
> PyMOL>as cartoon
> CmdLoad: ".\4v7y.sf" loaded as "4V7Y".
>
>
>
> On 19/03/2015 9:31 PM, Lukáš Pravda wrote:
>
> Hi Brenton,
>
>
>
> fetch 4v7y, type=cif
>
>
>
> is the command you are looking for
>
>
>
> All the best
>
>
>
> Lukas Pravda
>
> ---
>
> CEITEC - Central European Institute of Technology
>
> Masaryk University
>
> Brno, Czech Republic
>
> ---
>
>
>
> *From:* Brenton Horne [mailto:brentonho...@ymail.com
> <brentonho...@ymail.com>]
> *Sent:* Thursday, March 19, 2015 4:55 AM
> *To:* pymol-users@lists.sourceforge.net
> *Subject:* [PyMOL] Fetching PDBs; how to load .cifs provided instead of
> .pdbs
>
>
>
> Hi,
>
> I have noticed that for some PDBs wwPDB doesn't contain PDB files (e.g.,
> 4V7Y <http://www.rcsb.org/pdb/explore/explore.do?structureId=4V7Y>), but
> rather they have mmCIF files instead and I was wondering if it was possible
> to get the fetch command to fetch these mmCIFs instead of PDBs. Now to be
> clear, I do understand how to load mmCIFs that I have downloaded manually
> from wwPDB by going to File->Open... but I'd like to know how to get
> PyMOL to fetch these files from wwPDB and load them.
>
> Thanks for your time,
> Brenton
>
>
>
>
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--
Folmer Fredslund
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