Thank you, Ali!
One question - is there any command which would allow to change
position of the text of the label produced by the label sele, model ?
In fact as I noticed, it produces correctly label text just above the
object, while I need to move it a litle bit in one of the directions
...
Cheers,
пн, 22 февр. 2021 г. в 14:14, Ali Saad Kusay <akus8...@uni.sydney.edu.au>:
>
> Hi Jeff,
>
> The name of an object is stored in the model attribute.
> Select an atom in the object and use this command:
> label sele, model
>
> If you want to automate this over all your PyMOL objects, you can use this
> script, this will put a label at the centre of each object but it has to
> create a pseudoatom for each one. You can change coords.mean to coords.min or
> cords.max if you want the label to go at the corner of each object
> for i in cmd.get_object_list():
> coords = cmd.get_coords(i)
> mean_coords = coords.mean(axis=0).tolist()
> cmd.pseudoatom(i+"_psu", pos=mean_coords)
>
> cmd.label(i+"_psu", "'{}'".format(i))
>
> Cheers,
>
> Ali
>
> Ali Kusay | BPharm (Hons) | PhD Candidate & Pharmacist
> The University of Sydney School of Pharmacy | Faculty of Medicine and Health
> 424, Brain and Mind Centre | The University of Sydney | NSW 2050
>
> On 22/2/21, 10:47 pm, "Jeff Saxon" <jmsstarli...@gmail.com> wrote:
>
> Dear Pymol Users,
>
> I am looking for a possibility to display names of the objects in the
> pymol session. For example I loaded 4 objects corresponded to 2
> different positions of the same ligand as well as 2 positions of its
> centres of masses. How would it be possible to display the names of
> each of these loaded objects just near their visualisations in GUI in
> order that I could understand who is who without operating with the
> objects on the context menu?
>
>
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