It works, thank you Ali!! Cheers, J. вт, 23 февр. 2021 г. в 07:26, Ali Saad Kusay <akus8...@uni.sydney.edu.au>: > > Resending since I forgot to copy the PyMOL mailing list > > On 23/2/21, 7:17 am, "Ali Saad Kusay" <akus8...@uni.sydney.edu.au> wrote: > > Hi Jeff, > > There is several ways you can do this with string function in python > https://www.w3schools.com/python/python_ref_string.asp. > This is an easy one liner which replace "COG_" of "AA" with nothing if > found > label sele, model.replace('COG_','').replace('AA_','') > > Another way to do this is lets say you select an object beginning with > COG_, you can slice away the first 4 characters to get rid of COG_ > label sele, model[4:] > > Cheers, > > Ali > > On 23/2/21, 1:32 am, "Jeff Saxon" <jmsstarli...@gmail.com> wrote: > > pardon, just one additional question, which might be alitle bit custom > issue, however.. > > Imagine, that I have 2 groups of the pdbs objects loaded into same > pymol session: 2 pdbs with the prefix COG_*.pdb, and 2 pdbs with the > prefix AA_*.pdb. Would it be possible to subtract the both prefixes > from the labels produced using cmd.label('sele', 'model') ? Or > alternatively I ought to rename the both objects before their > labelling? What are the other possible solutions ? > > пн, 22 февр. 2021 г. в 15:07, Jeff Saxon <jmsstarli...@gmail.com>: > > > > Right, this is what I was looking for! > > Thank you so much, Ali! > > Cheers, > > J. > > > > пн, 22 февр. 2021 г. в 14:59, Ali Saad Kusay > <akus8...@uni.sydney.edu.au>: > > > > > > No worries Jeff, > > > > > > Use editing mode and you can move it with mouse. See around 3:30 > in this video, > https://protect-au.mimecast.com/s/_r_iCANpgjCwqAQMtGDPTv?domain=m.youtube.com. > > > > > > You can move all labels with this command: > > > > > > set label_position (x,y,z) > > > > > > This will move the labels as needed in the x, y and z directions > > > > > > Cheers, > > > > > > Ali > > > > > > > > > On 23 Feb 2021, at 12:51 am, Jeff Saxon <jmsstarli...@gmail.com> > wrote: > > > > > > Thank you, Ali! > > > One question - is there any command which would allow to change > > > position of the text of the label produced by the label sele, > model ? > > > In fact as I noticed, it produces correctly label text just above > the > > > object, while I need to move it a litle bit in one of the > directions > > > ... > > > Cheers, > > > > > > пн, 22 февр. 2021 г. в 14:14, Ali Saad Kusay > <akus8...@uni.sydney.edu.au>: > > > > > > > > > Hi Jeff, > > > > > > > > > The name of an object is stored in the model attribute. > > > > > > Select an atom in the object and use this command: > > > > > > label sele, model > > > > > > > > > If you want to automate this over all your PyMOL objects, you can > use this script, this will put a label at the centre of each object but it > has to create a pseudoatom for each one. You can change coords.mean to > coords.min or cords.max if you want the label to go at the corner of each > object > > > > > > for i in cmd.get_object_list(): > > > > > > coords = cmd.get_coords(i) > > > > > > mean_coords = coords.mean(axis=0).tolist() > > > > > > cmd.pseudoatom(i+"_psu", pos=mean_coords) > > > > > > > > > cmd.label(i+"_psu", "'{}'".format(i)) > > > > > > > > > Cheers, > > > > > > > > > Ali > > > > > > > > > Ali Kusay | BPharm (Hons) | PhD Candidate & Pharmacist > > > > > > The University of Sydney School of Pharmacy | Faculty of Medicine > and Health > > > > > > 424, Brain and Mind Centre | The University of Sydney | NSW 2050 > > > > > > > > > On 22/2/21, 10:47 pm, "Jeff Saxon" <jmsstarli...@gmail.com> wrote: > > > > > > > > > Dear Pymol Users, > > > > > > > > > I am looking for a possibility to display names of the objects > in the > > > > > > pymol session. For example I loaded 4 objects corresponded to 2 > > > > > > different positions of the same ligand as well as 2 positions > of its > > > > > > centres of masses. How would it be possible to display the > names of > > > > > > each of these loaded objects just near their visualisations in > GUI in > > > > > > order that I could understand who is who without operating > with the > > > > > > objects on the context menu? > > > > > > > > > > > > _______________________________________________ > > > > > > PyMOL-users mailing list > > > > > > Archives: > https://protect-au.mimecast.com/s/1Qz7CBNqjlCw25G3t6a3Ug?domain=mail-archive.com > > > > > > Unsubscribe: > https://protect-au.mimecast.com/s/FesTCD1vlpTEGl9QfAQcf7?domain=sourceforge.net > > > > > > > > > > > > > > >
_______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
