No worries Jeff,
Use editing mode and you can move it with mouse. See around 3:30 in this video,
https://m.youtube.com/watch?v=yBFzJ3ql4qU&ab_channel=MolecularMemory.
You can move all labels with this command:
set label_position (x,y,z)
This will move the labels as needed in the x, y and z directions
Cheers,
Ali
On 23 Feb 2021, at 12:51 am, Jeff Saxon <jmsstarli...@gmail.com> wrote:
Thank you, Ali!
One question - is there any command which would allow to change
position of the text of the label produced by the label sele, model ?
In fact as I noticed, it produces correctly label text just above the
object, while I need to move it a litle bit in one of the directions
...
Cheers,
пн, 22 февр. 2021 г. в 14:14, Ali Saad Kusay <akus8...@uni.sydney.edu.au>:
Hi Jeff,
The name of an object is stored in the model attribute.
Select an atom in the object and use this command:
label sele, model
If you want to automate this over all your PyMOL objects, you can use this
script, this will put a label at the centre of each object but it has to create
a pseudoatom for each one. You can change coords.mean to coords.min or
cords.max if you want the label to go at the corner of each object
for i in cmd.get_object_list():
coords = cmd.get_coords(i)
mean_coords = coords.mean(axis=0).tolist()
cmd.pseudoatom(i+"_psu", pos=mean_coords)
cmd.label(i+"_psu", "'{}'".format(i))
Cheers,
Ali
Ali Kusay | BPharm (Hons) | PhD Candidate & Pharmacist
The University of Sydney School of Pharmacy | Faculty of Medicine and Health
424, Brain and Mind Centre | The University of Sydney | NSW 2050
On 22/2/21, 10:47 pm, "Jeff Saxon" <jmsstarli...@gmail.com> wrote:
Dear Pymol Users,
I am looking for a possibility to display names of the objects in the
pymol session. For example I loaded 4 objects corresponded to 2
different positions of the same ligand as well as 2 positions of its
centres of masses. How would it be possible to display the names of
each of these loaded objects just near their visualisations in GUI in
order that I could understand who is who without operating with the
objects on the context menu?
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