Transparency mode solves it. Thanks. On Sat, May 8, 2021 at 2:41 PM Jarrett Johnson < jarrett.john...@schrodinger.com> wrote:
> Hi Criss, > > It doesn't appear to be broken from what I see. Helices may not appear > transparent to each other if you're using single-layer transparency by > default. Setting `transparency_mode` to 3 should show transparent objects > beneath each other. > > https://pymolwiki.org/index.php/Transparency_mode > > Best, > > Jarrett J > > On Sat, May 8, 2021 at 10:01 AM Criss Hartzell <criss.hartz...@gmail.com> > wrote: > >> I am using PYMOL2.4.1 on windows. >> I want to make two cartoon helices transparent in an object having 10 >> heleices. Before version 2.3, I would make a copy of the object, hide the >> two transparent helices on the original object and show them on the copy >> with transparency set to 0.5. After PYMOL2.3, cartoon-transparency is >> supposed to work on the atom level, but when I try to apply cartoon >> transparency to the two helices as a selection >> (cartoon_transparency,0.5,sele), the helices change color but do not become >> transparent. Am I doing something wrong? >> >> -- >> Criss Hartzell >> _______________________________________________ >> PyMOL-users mailing list >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> Unsubscribe: >> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > > > -- > > *Jarrett Johnson* | Senior Developer > [image: Schrodinger Logo] <https://www.schrodinger.com/> > -- Criss Hartzell
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