There can be multiple reasons for a slower 4.1 experience. Known ones are:

1. CPU runs at ~800 MHz or so [1]
2. You're a file pool user. File pools were serialized in 4.1, likely dropping 
their performance by ~30-50%. [2]
3. Possibly further issues in 4.1 [2].

[1] https://github.com/QubesOS/qubes-issues/issues/4604
[2] https://github.com/QubesOS/qubes-issues/issues/7075

Anyway it seems that just a few users are affected. Others report 8s VM startup 
performance or less (see forum).

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