Please do read ?sessionInfo

     Where R was compiled under macOS 10.x (as the CRAN Intel
     distributions have been) but running under ‘Big Sur’ or later,
     macOS reports itself as ‘10.16’ (which R recognizes as ‘Big Sur
     ...’) and not ‘11.x’ or later.

This is only an issue on Intel binary distributions: the arm64 ones are built on macOS 11.

On 12/02/2023 09:48, Calboli Federico (LUKE) wrote:
Pretty use R does disinguish MacOS versions:

sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.2

for me.  So if one is on Ventura but R thinks it is running on a different OS, 
that’s a starting point right there.

BW

F

On 11. Feb 2023, at 23.53, Jeff Newmiller <jdnew...@dcn.davis.ca.us> wrote:

Operating systems are designed to be as backward-compatible as possible... R 
Core doesn't generally know what distinguishing features will identify a new OS 
until it is released, nor what it will be called, so R has a handicap.

On February 11, 2023 1:12:42 PM PST, Christofer Bogaso 
<bogaso.christo...@gmail.com> wrote:
Actually when I check from the Apple icon, then I see that I am
actually running Ventura

For some reason, R's sessionInfo() is reporting that I am running Big Sur.

Not sure why R is reporting wrong. Thanks,

'macOS Big Sur ...' is not 'wrong'.

On Sun, Feb 12, 2023 at 2:38 AM Christofer Bogaso
<bogaso.christo...@gmail.com> wrote:

Hi,

I am running Big Sur. Below is my sessionInfo()

sessionInfo()

R version 4.2.1 (2022-06-23)

Platform: x86_64-apple-darwin17.0 (64-bit)

Running under: macOS Big Sur ... 10.16


Matrix products: default

BLAS:   
/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib

LAPACK: 
/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib


locale:

[1] C/UTF-8/C/C/C/C


attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base


loaded via a namespace (and not attached):

[1] compiler_4.2.1

On Sun, Feb 12, 2023 at 1:55 AM Simon Urbanek
<simon.urba...@r-project.org> wrote:

Christofer,

yes, unfortunately this is a known bug in macOS Ventura affecting a lot of 
command-line programs that use GUI. Do not upgrade to Ventura (usually a good 
advice given the long list of known bugs in Ventura) or wait for a fix from 
Apple.

Cheers,
Simon



On Feb 11, 2023, at 11:28 PM, Christofer Bogaso <bogaso.christo...@gmail.com> 
wrote:

Hi,

When I plot something in R, then it open Quartz and in the console I
see below messages

plot(1:4)

1   HIToolbox                           0x00007ff8229a2726 
_ZN15MenuBarInstance22EnsureAutoShowObserverEv + 102

2   HIToolbox                           0x00007ff8229a22b8
_ZN15MenuBarInstance14EnableAutoShowEv + 52

3   HIToolbox                           0x00007ff822946908
SetMenuBarObscured + 408

4   HIToolbox                           0x00007ff8229464ca
_ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
+ 164

5   HIToolbox                           0x00007ff822940996
_ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 252

6   HIToolbox                           0x00007ff822908bd2
_NotifyEventLoopObservers + 153

7   HIToolbox                           0x00007ff8229403e6
AcquireEventFromQueue + 494

8   HIToolbox                           0x00007ff82292f3ec
ReceiveNextEventCommon + 285

9   HIToolbox                           0x00007ff82292f2b3
_BlockUntilNextEventMatchingListInModeWithFilter + 70

10  AppKit                              0x00007ff81c136f33 _DPSNextEvent + 909

11  AppKit                              0x00007ff81c135db4
-[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219

12  grDevices.so                        0x00000001086f7a3b input_handler + 155

13  libR.dylib                          0x0000000108b142cf
Rstd_ReadConsole + 2127

14  libR.dylib                          0x0000000108a15b74
Rf_ReplIteration + 100

15  libR.dylib                          0x0000000108a174b1 R_ReplConsole + 161

16  libR.dylib                          0x0000000108a17402 run_Rmainloop + 82

17  libR.dylib                          0x0000000108a1753e Rf_mainloop + 14

18  R                                   0x000000010847af5b main + 27

19  dyld                                0x00007ff818bde310 start + 2432

1   HIToolbox                           0x00007ff822aa952b
_ZN15MenuBarInstance21IsAutoShowHideAllowedEv + 259

2   HIToolbox                           0x00007ff8229a233e
_ZN15MenuBarInstance24UpdateAutoShowVisibilityE5Pointh + 34

3   HIToolbox                           0x00007ff8229117a4
_ZN15MenuBarInstance16ForEachMenuBarDoEU13block_pointerFvPS_E + 46

4   HIToolbox                           0x00007ff8229a293d
_ZN15MenuBarInstance20AutoShowHideObserverEjP14OpaqueEventRefPv + 165

5   HIToolbox                           0x00007ff822908bd2
_NotifyEventLoopObservers + 153

6   HIToolbox                           0x00007ff82293afb8
PostEventToQueueInternal + 700

7   HIToolbox                           0x00007ff82293c871
_ZL29CreateAndPostEventWithCGEventP9__CGEventjhP17__CFMachPortBoost +
404

8   HIToolbox                           0x00007ff822948ee9
_ZL15Convert1CGEventh + 246

9   HIToolbox                           0x00007ff822948d91
_ZL16MainLoopObserverjP14OpaqueEventRefPv + 41

10  HIToolbox                           0x00007ff822908bd2
_NotifyEventLoopObservers + 153

11  HIToolbox                           0x00007ff82292f726
RunCurrentEventLoopInMode + 228

12  HIToolbox                           0x00007ff82292f396
ReceiveNextEventCommon + 199

13  HIToolbox                           0x00007ff82292f2b3
_BlockUntilNextEventMatchingListInModeWithFilter + 70

14  AppKit                              0x00007ff81c136f33 _DPSNextEvent + 909

15  AppKit                              0x00007ff81c135db4
-[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219

16  grDevices.so                        0x00000001086f7a3b input_handler + 155

17  libR.dylib                          0x0000000108b142cf
Rstd_ReadConsole + 2127

18  libR.dylib                          0x0000000108a15b74
Rf_ReplIteration + 100

19  libR.dylib                          0x0000000108a174b1 R_ReplConsole + 161

20  libR.dylib                          0x0000000108a17402 run_Rmainloop + 82

21  libR.dylib                          0x0000000108a1753e Rf_mainloop + 14

22  R                                   0x000000010847af5b main + 27

23  dyld                                0x00007ff818bde310 start + 2432

1   HIToolbox                           0x00007ff82292f0c2
_ZN15MenuBarInstance22RemoveAutoShowObserverEv + 30

2   HIToolbox                           0x00007ff8229467e3
SetMenuBarObscured + 115

3   HIToolbox                           0x00007ff82294d29e
_ZN13HIApplication11FrontUILostEv + 34

4   HIToolbox                           0x00007ff822946622
_ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh
+ 508

5   HIToolbox                           0x00007ff822940950
_ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 182

6   HIToolbox                           0x00007ff822908bd2
_NotifyEventLoopObservers + 153

7   HIToolbox                           0x00007ff8229403e6
AcquireEventFromQueue + 494

8   HIToolbox                           0x00007ff82292f3ec
ReceiveNextEventCommon + 285

9   HIToolbox                           0x00007ff82292f2b3
_BlockUntilNextEventMatchingListInModeWithFilter + 70

10  AppKit                              0x00007ff81c136f33 _DPSNextEvent + 909

11  AppKit                              0x00007ff81c135db4
-[NSApplication(NSEvent)
_nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219

12  grDevices.so                        0x00000001086f7a77 input_handler + 215

13  libR.dylib                          0x0000000108b142cf
Rstd_ReadConsole + 2127

14  libR.dylib                          0x0000000108a15b74
Rf_ReplIteration + 100

15  libR.dylib                          0x0000000108a174b1 R_ReplConsole + 161

16  libR.dylib                          0x0000000108a17402 run_Rmainloop + 82

17  libR.dylib                          0x0000000108a1753e Rf_mainloop + 14

18  R                                   0x000000010847af5b main + 27

19  dyld                                0x00007ff818bde310 start + 2432

I am using R through Terminal in my Mac

sessionInfo()

R version 4.2.1 (2022-06-23)

Platform: x86_64-apple-darwin17.0 (64-bit)

Running under: macOS Big Sur ... 10.16


Matrix products: default

BLAS:   
/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib

LAPACK: 
/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib


locale:

[1] C/UTF-8/C/C/C/C


attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base


loaded via a namespace (and not attached):

[1] compiler_4.2.1

Is there any way to stop/hide these messages?

Thanks for your time.

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Tutkija
Genomiikka ja jalostus, Luonnonvarakeskus
+358295322656



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