Brian, I can then report that on R 4.2.2 on aarch64-apple-darwin20 (64-bit), MacOS 13.2
plot(1:4) returns a plot with no warnings nor other unexpected output, so Christofer’s problem is limited to the x86 achitecture. > On 12. Feb 2023, at 13.33, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote: > > Please do read ?sessionInfo > > Where R was compiled under macOS 10.x (as the CRAN Intel > distributions have been) but running under ‘Big Sur’ or later, > macOS reports itself as ‘10.16’ (which R recognizes as ‘Big Sur > ...’) and not ‘11.x’ or later. > > This is only an issue on Intel binary distributions: the arm64 ones are built > on macOS 11. > > On 12/02/2023 09:48, Calboli Federico (LUKE) wrote: >> Pretty use R does disinguish MacOS versions: >>> sessionInfo() >> R version 4.2.2 (2022-10-31) >> Platform: aarch64-apple-darwin20 (64-bit) >> Running under: macOS Ventura 13.2 >> for me. So if one is on Ventura but R thinks it is running on a different >> OS, that’s a starting point right there. >> BW >> F >>> On 11. Feb 2023, at 23.53, Jeff Newmiller <jdnew...@dcn.davis.ca.us> wrote: >>> >>> Operating systems are designed to be as backward-compatible as possible... >>> R Core doesn't generally know what distinguishing features will identify a >>> new OS until it is released, nor what it will be called, so R has a >>> handicap. >>> >>> On February 11, 2023 1:12:42 PM PST, Christofer Bogaso >>> <bogaso.christo...@gmail.com> wrote: >>>> Actually when I check from the Apple icon, then I see that I am >>>> actually running Ventura >>>> >>>> For some reason, R's sessionInfo() is reporting that I am running Big Sur. >>>> >>>> Not sure why R is reporting wrong. Thanks, > > 'macOS Big Sur ...' is not 'wrong'. > >>>> On Sun, Feb 12, 2023 at 2:38 AM Christofer Bogaso >>>> <bogaso.christo...@gmail.com> wrote: >>>>> >>>>> Hi, >>>>> >>>>> I am running Big Sur. Below is my sessionInfo() >>>>> >>>>>> sessionInfo() >>>>> >>>>> R version 4.2.1 (2022-06-23) >>>>> >>>>> Platform: x86_64-apple-darwin17.0 (64-bit) >>>>> >>>>> Running under: macOS Big Sur ... 10.16 >>>>> >>>>> >>>>> Matrix products: default >>>>> >>>>> BLAS: >>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib >>>>> >>>>> LAPACK: >>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib >>>>> >>>>> >>>>> locale: >>>>> >>>>> [1] C/UTF-8/C/C/C/C >>>>> >>>>> >>>>> attached base packages: >>>>> >>>>> [1] stats graphics grDevices utils datasets methods base >>>>> >>>>> >>>>> loaded via a namespace (and not attached): >>>>> >>>>> [1] compiler_4.2.1 >>>>> >>>>> On Sun, Feb 12, 2023 at 1:55 AM Simon Urbanek >>>>> <simon.urba...@r-project.org> wrote: >>>>>> >>>>>> Christofer, >>>>>> >>>>>> yes, unfortunately this is a known bug in macOS Ventura affecting a lot >>>>>> of command-line programs that use GUI. Do not upgrade to Ventura >>>>>> (usually a good advice given the long list of known bugs in Ventura) or >>>>>> wait for a fix from Apple. >>>>>> >>>>>> Cheers, >>>>>> Simon >>>>>> >>>>>> >>>>>> >>>>>>> On Feb 11, 2023, at 11:28 PM, Christofer Bogaso >>>>>>> <bogaso.christo...@gmail.com> wrote: >>>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> When I plot something in R, then it open Quartz and in the console I >>>>>>> see below messages >>>>>>> >>>>>>>> plot(1:4) >>>>>>> >>>>>>>> 1 HIToolbox 0x00007ff8229a2726 >>>>>>>> _ZN15MenuBarInstance22EnsureAutoShowObserverEv + 102 >>>>>>> >>>>>>> 2 HIToolbox 0x00007ff8229a22b8 >>>>>>> _ZN15MenuBarInstance14EnableAutoShowEv + 52 >>>>>>> >>>>>>> 3 HIToolbox 0x00007ff822946908 >>>>>>> SetMenuBarObscured + 408 >>>>>>> >>>>>>> 4 HIToolbox 0x00007ff8229464ca >>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh >>>>>>> + 164 >>>>>>> >>>>>>> 5 HIToolbox 0x00007ff822940996 >>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 252 >>>>>>> >>>>>>> 6 HIToolbox 0x00007ff822908bd2 >>>>>>> _NotifyEventLoopObservers + 153 >>>>>>> >>>>>>> 7 HIToolbox 0x00007ff8229403e6 >>>>>>> AcquireEventFromQueue + 494 >>>>>>> >>>>>>> 8 HIToolbox 0x00007ff82292f3ec >>>>>>> ReceiveNextEventCommon + 285 >>>>>>> >>>>>>> 9 HIToolbox 0x00007ff82292f2b3 >>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70 >>>>>>> >>>>>>> 10 AppKit 0x00007ff81c136f33 >>>>>>> _DPSNextEvent + 909 >>>>>>> >>>>>>> 11 AppKit 0x00007ff81c135db4 >>>>>>> -[NSApplication(NSEvent) >>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219 >>>>>>> >>>>>>> 12 grDevices.so 0x00000001086f7a3b >>>>>>> input_handler + 155 >>>>>>> >>>>>>> 13 libR.dylib 0x0000000108b142cf >>>>>>> Rstd_ReadConsole + 2127 >>>>>>> >>>>>>> 14 libR.dylib 0x0000000108a15b74 >>>>>>> Rf_ReplIteration + 100 >>>>>>> >>>>>>> 15 libR.dylib 0x0000000108a174b1 >>>>>>> R_ReplConsole + 161 >>>>>>> >>>>>>> 16 libR.dylib 0x0000000108a17402 >>>>>>> run_Rmainloop + 82 >>>>>>> >>>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop >>>>>>> + 14 >>>>>>> >>>>>>> 18 R 0x000000010847af5b main + 27 >>>>>>> >>>>>>> 19 dyld 0x00007ff818bde310 start + 2432 >>>>>>> >>>>>>> 1 HIToolbox 0x00007ff822aa952b >>>>>>> _ZN15MenuBarInstance21IsAutoShowHideAllowedEv + 259 >>>>>>> >>>>>>> 2 HIToolbox 0x00007ff8229a233e >>>>>>> _ZN15MenuBarInstance24UpdateAutoShowVisibilityE5Pointh + 34 >>>>>>> >>>>>>> 3 HIToolbox 0x00007ff8229117a4 >>>>>>> _ZN15MenuBarInstance16ForEachMenuBarDoEU13block_pointerFvPS_E + 46 >>>>>>> >>>>>>> 4 HIToolbox 0x00007ff8229a293d >>>>>>> _ZN15MenuBarInstance20AutoShowHideObserverEjP14OpaqueEventRefPv + 165 >>>>>>> >>>>>>> 5 HIToolbox 0x00007ff822908bd2 >>>>>>> _NotifyEventLoopObservers + 153 >>>>>>> >>>>>>> 6 HIToolbox 0x00007ff82293afb8 >>>>>>> PostEventToQueueInternal + 700 >>>>>>> >>>>>>> 7 HIToolbox 0x00007ff82293c871 >>>>>>> _ZL29CreateAndPostEventWithCGEventP9__CGEventjhP17__CFMachPortBoost + >>>>>>> 404 >>>>>>> >>>>>>> 8 HIToolbox 0x00007ff822948ee9 >>>>>>> _ZL15Convert1CGEventh + 246 >>>>>>> >>>>>>> 9 HIToolbox 0x00007ff822948d91 >>>>>>> _ZL16MainLoopObserverjP14OpaqueEventRefPv + 41 >>>>>>> >>>>>>> 10 HIToolbox 0x00007ff822908bd2 >>>>>>> _NotifyEventLoopObservers + 153 >>>>>>> >>>>>>> 11 HIToolbox 0x00007ff82292f726 >>>>>>> RunCurrentEventLoopInMode + 228 >>>>>>> >>>>>>> 12 HIToolbox 0x00007ff82292f396 >>>>>>> ReceiveNextEventCommon + 199 >>>>>>> >>>>>>> 13 HIToolbox 0x00007ff82292f2b3 >>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70 >>>>>>> >>>>>>> 14 AppKit 0x00007ff81c136f33 >>>>>>> _DPSNextEvent + 909 >>>>>>> >>>>>>> 15 AppKit 0x00007ff81c135db4 >>>>>>> -[NSApplication(NSEvent) >>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219 >>>>>>> >>>>>>> 16 grDevices.so 0x00000001086f7a3b >>>>>>> input_handler + 155 >>>>>>> >>>>>>> 17 libR.dylib 0x0000000108b142cf >>>>>>> Rstd_ReadConsole + 2127 >>>>>>> >>>>>>> 18 libR.dylib 0x0000000108a15b74 >>>>>>> Rf_ReplIteration + 100 >>>>>>> >>>>>>> 19 libR.dylib 0x0000000108a174b1 >>>>>>> R_ReplConsole + 161 >>>>>>> >>>>>>> 20 libR.dylib 0x0000000108a17402 >>>>>>> run_Rmainloop + 82 >>>>>>> >>>>>>> 21 libR.dylib 0x0000000108a1753e Rf_mainloop >>>>>>> + 14 >>>>>>> >>>>>>> 22 R 0x000000010847af5b main + 27 >>>>>>> >>>>>>> 23 dyld 0x00007ff818bde310 start + 2432 >>>>>>> >>>>>>> 1 HIToolbox 0x00007ff82292f0c2 >>>>>>> _ZN15MenuBarInstance22RemoveAutoShowObserverEv + 30 >>>>>>> >>>>>>> 2 HIToolbox 0x00007ff8229467e3 >>>>>>> SetMenuBarObscured + 115 >>>>>>> >>>>>>> 3 HIToolbox 0x00007ff82294d29e >>>>>>> _ZN13HIApplication11FrontUILostEv + 34 >>>>>>> >>>>>>> 4 HIToolbox 0x00007ff822946622 >>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh >>>>>>> + 508 >>>>>>> >>>>>>> 5 HIToolbox 0x00007ff822940950 >>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 182 >>>>>>> >>>>>>> 6 HIToolbox 0x00007ff822908bd2 >>>>>>> _NotifyEventLoopObservers + 153 >>>>>>> >>>>>>> 7 HIToolbox 0x00007ff8229403e6 >>>>>>> AcquireEventFromQueue + 494 >>>>>>> >>>>>>> 8 HIToolbox 0x00007ff82292f3ec >>>>>>> ReceiveNextEventCommon + 285 >>>>>>> >>>>>>> 9 HIToolbox 0x00007ff82292f2b3 >>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70 >>>>>>> >>>>>>> 10 AppKit 0x00007ff81c136f33 >>>>>>> _DPSNextEvent + 909 >>>>>>> >>>>>>> 11 AppKit 0x00007ff81c135db4 >>>>>>> -[NSApplication(NSEvent) >>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219 >>>>>>> >>>>>>> 12 grDevices.so 0x00000001086f7a77 >>>>>>> input_handler + 215 >>>>>>> >>>>>>> 13 libR.dylib 0x0000000108b142cf >>>>>>> Rstd_ReadConsole + 2127 >>>>>>> >>>>>>> 14 libR.dylib 0x0000000108a15b74 >>>>>>> Rf_ReplIteration + 100 >>>>>>> >>>>>>> 15 libR.dylib 0x0000000108a174b1 >>>>>>> R_ReplConsole + 161 >>>>>>> >>>>>>> 16 libR.dylib 0x0000000108a17402 >>>>>>> run_Rmainloop + 82 >>>>>>> >>>>>>> 17 libR.dylib 0x0000000108a1753e Rf_mainloop >>>>>>> + 14 >>>>>>> >>>>>>> 18 R 0x000000010847af5b main + 27 >>>>>>> >>>>>>> 19 dyld 0x00007ff818bde310 start + 2432 >>>>>>> >>>>>>> I am using R through Terminal in my Mac >>>>>>> >>>>>>>> sessionInfo() >>>>>>> >>>>>>> R version 4.2.1 (2022-06-23) >>>>>>> >>>>>>> Platform: x86_64-apple-darwin17.0 (64-bit) >>>>>>> >>>>>>> Running under: macOS Big Sur ... 10.16 >>>>>>> >>>>>>> >>>>>>> Matrix products: default >>>>>>> >>>>>>> BLAS: >>>>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib >>>>>>> >>>>>>> LAPACK: >>>>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib >>>>>>> >>>>>>> >>>>>>> locale: >>>>>>> >>>>>>> [1] C/UTF-8/C/C/C/C >>>>>>> >>>>>>> >>>>>>> attached base packages: >>>>>>> >>>>>>> [1] stats graphics grDevices utils datasets methods base >>>>>>> >>>>>>> >>>>>>> loaded via a namespace (and not attached): >>>>>>> >>>>>>> [1] compiler_4.2.1 >>>>>>> >>>>>>> Is there any way to stop/hide these messages? >>>>>>> >>>>>>> Thanks for your time. >>>>>>> >>>>>>> _______________________________________________ >>>>>>> R-SIG-Mac mailing list >>>>>>> R-SIG-Mac@r-project.org >>>>>>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 >>>>>>> >>>>>> >>>> >>>> _______________________________________________ >>>> R-SIG-Mac mailing list >>>> R-SIG-Mac@r-project.org >>>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 >>> >>> -- >>> Sent from my phone. Please excuse my brevity. >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 >> -- >> Federico Calboli >> Tutkija >> Genomiikka ja jalostus, Luonnonvarakeskus >> +358295322656 >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 > > -- > Brian D. Ripley, rip...@stats.ox.ac.uk > Emeritus Professor of Applied Statistics, University of Oxford > -- Federico Calboli Tutkija Genomiikka ja jalostus, Luonnonvarakeskus +358295322656 _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac