Thanks for all your inputs. However I now installed latest version of R and still facing the same problem. Normally these messages don't come, but they appear when I make Quartz active window (i.e. bring this front)
> sessionInfo() R version 4.2.2 (2022-10-31) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur ... 10.16 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib locale: [1] C/UTF-8/C/C/C/C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.2.2 On Sun, Feb 12, 2023 at 5:14 PM Calboli Federico (LUKE) <federico.calb...@luke.fi> wrote: > > Brian, > > I can then report that on R 4.2.2 on aarch64-apple-darwin20 (64-bit), MacOS > 13.2 > > plot(1:4) > > returns a plot with no warnings nor other unexpected output, so Christofer’s > problem is limited to the x86 achitecture. > > > > > > > On 12. Feb 2023, at 13.33, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote: > > > > Please do read ?sessionInfo > > > > Where R was compiled under macOS 10.x (as the CRAN Intel > > distributions have been) but running under ‘Big Sur’ or later, > > macOS reports itself as ‘10.16’ (which R recognizes as ‘Big Sur > > ...’) and not ‘11.x’ or later. > > > > This is only an issue on Intel binary distributions: the arm64 ones are > > built on macOS 11. > > > > On 12/02/2023 09:48, Calboli Federico (LUKE) wrote: > >> Pretty use R does disinguish MacOS versions: > >>> sessionInfo() > >> R version 4.2.2 (2022-10-31) > >> Platform: aarch64-apple-darwin20 (64-bit) > >> Running under: macOS Ventura 13.2 > >> for me. So if one is on Ventura but R thinks it is running on a different > >> OS, that’s a starting point right there. > >> BW > >> F > >>> On 11. Feb 2023, at 23.53, Jeff Newmiller <jdnew...@dcn.davis.ca.us> > >>> wrote: > >>> > >>> Operating systems are designed to be as backward-compatible as > >>> possible... R Core doesn't generally know what distinguishing features > >>> will identify a new OS until it is released, nor what it will be called, > >>> so R has a handicap. > >>> > >>> On February 11, 2023 1:12:42 PM PST, Christofer Bogaso > >>> <bogaso.christo...@gmail.com> wrote: > >>>> Actually when I check from the Apple icon, then I see that I am > >>>> actually running Ventura > >>>> > >>>> For some reason, R's sessionInfo() is reporting that I am running Big > >>>> Sur. > >>>> > >>>> Not sure why R is reporting wrong. Thanks, > > > > 'macOS Big Sur ...' is not 'wrong'. > > > >>>> On Sun, Feb 12, 2023 at 2:38 AM Christofer Bogaso > >>>> <bogaso.christo...@gmail.com> wrote: > >>>>> > >>>>> Hi, > >>>>> > >>>>> I am running Big Sur. Below is my sessionInfo() > >>>>> > >>>>>> sessionInfo() > >>>>> > >>>>> R version 4.2.1 (2022-06-23) > >>>>> > >>>>> Platform: x86_64-apple-darwin17.0 (64-bit) > >>>>> > >>>>> Running under: macOS Big Sur ... 10.16 > >>>>> > >>>>> > >>>>> Matrix products: default > >>>>> > >>>>> BLAS: > >>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib > >>>>> > >>>>> LAPACK: > >>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib > >>>>> > >>>>> > >>>>> locale: > >>>>> > >>>>> [1] C/UTF-8/C/C/C/C > >>>>> > >>>>> > >>>>> attached base packages: > >>>>> > >>>>> [1] stats graphics grDevices utils datasets methods base > >>>>> > >>>>> > >>>>> loaded via a namespace (and not attached): > >>>>> > >>>>> [1] compiler_4.2.1 > >>>>> > >>>>> On Sun, Feb 12, 2023 at 1:55 AM Simon Urbanek > >>>>> <simon.urba...@r-project.org> wrote: > >>>>>> > >>>>>> Christofer, > >>>>>> > >>>>>> yes, unfortunately this is a known bug in macOS Ventura affecting a > >>>>>> lot of command-line programs that use GUI. Do not upgrade to Ventura > >>>>>> (usually a good advice given the long list of known bugs in Ventura) > >>>>>> or wait for a fix from Apple. > >>>>>> > >>>>>> Cheers, > >>>>>> Simon > >>>>>> > >>>>>> > >>>>>> > >>>>>>> On Feb 11, 2023, at 11:28 PM, Christofer Bogaso > >>>>>>> <bogaso.christo...@gmail.com> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> > >>>>>>> When I plot something in R, then it open Quartz and in the console I > >>>>>>> see below messages > >>>>>>> > >>>>>>>> plot(1:4) > >>>>>>> > >>>>>>>> 1 HIToolbox 0x00007ff8229a2726 > >>>>>>>> _ZN15MenuBarInstance22EnsureAutoShowObserverEv + 102 > >>>>>>> > >>>>>>> 2 HIToolbox 0x00007ff8229a22b8 > >>>>>>> _ZN15MenuBarInstance14EnableAutoShowEv + 52 > >>>>>>> > >>>>>>> 3 HIToolbox 0x00007ff822946908 > >>>>>>> SetMenuBarObscured + 408 > >>>>>>> > >>>>>>> 4 HIToolbox 0x00007ff8229464ca > >>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh > >>>>>>> + 164 > >>>>>>> > >>>>>>> 5 HIToolbox 0x00007ff822940996 > >>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 252 > >>>>>>> > >>>>>>> 6 HIToolbox 0x00007ff822908bd2 > >>>>>>> _NotifyEventLoopObservers + 153 > >>>>>>> > >>>>>>> 7 HIToolbox 0x00007ff8229403e6 > >>>>>>> AcquireEventFromQueue + 494 > >>>>>>> > >>>>>>> 8 HIToolbox 0x00007ff82292f3ec > >>>>>>> ReceiveNextEventCommon + 285 > >>>>>>> > >>>>>>> 9 HIToolbox 0x00007ff82292f2b3 > >>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70 > >>>>>>> > >>>>>>> 10 AppKit 0x00007ff81c136f33 > >>>>>>> _DPSNextEvent + 909 > >>>>>>> > >>>>>>> 11 AppKit 0x00007ff81c135db4 > >>>>>>> -[NSApplication(NSEvent) > >>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219 > >>>>>>> > >>>>>>> 12 grDevices.so 0x00000001086f7a3b > >>>>>>> input_handler + 155 > >>>>>>> > >>>>>>> 13 libR.dylib 0x0000000108b142cf > >>>>>>> Rstd_ReadConsole + 2127 > >>>>>>> > >>>>>>> 14 libR.dylib 0x0000000108a15b74 > >>>>>>> Rf_ReplIteration + 100 > >>>>>>> > >>>>>>> 15 libR.dylib 0x0000000108a174b1 > >>>>>>> R_ReplConsole + 161 > >>>>>>> > >>>>>>> 16 libR.dylib 0x0000000108a17402 > >>>>>>> run_Rmainloop + 82 > >>>>>>> > >>>>>>> 17 libR.dylib 0x0000000108a1753e > >>>>>>> Rf_mainloop + 14 > >>>>>>> > >>>>>>> 18 R 0x000000010847af5b main + 27 > >>>>>>> > >>>>>>> 19 dyld 0x00007ff818bde310 start + > >>>>>>> 2432 > >>>>>>> > >>>>>>> 1 HIToolbox 0x00007ff822aa952b > >>>>>>> _ZN15MenuBarInstance21IsAutoShowHideAllowedEv + 259 > >>>>>>> > >>>>>>> 2 HIToolbox 0x00007ff8229a233e > >>>>>>> _ZN15MenuBarInstance24UpdateAutoShowVisibilityE5Pointh + 34 > >>>>>>> > >>>>>>> 3 HIToolbox 0x00007ff8229117a4 > >>>>>>> _ZN15MenuBarInstance16ForEachMenuBarDoEU13block_pointerFvPS_E + 46 > >>>>>>> > >>>>>>> 4 HIToolbox 0x00007ff8229a293d > >>>>>>> _ZN15MenuBarInstance20AutoShowHideObserverEjP14OpaqueEventRefPv + 165 > >>>>>>> > >>>>>>> 5 HIToolbox 0x00007ff822908bd2 > >>>>>>> _NotifyEventLoopObservers + 153 > >>>>>>> > >>>>>>> 6 HIToolbox 0x00007ff82293afb8 > >>>>>>> PostEventToQueueInternal + 700 > >>>>>>> > >>>>>>> 7 HIToolbox 0x00007ff82293c871 > >>>>>>> _ZL29CreateAndPostEventWithCGEventP9__CGEventjhP17__CFMachPortBoost + > >>>>>>> 404 > >>>>>>> > >>>>>>> 8 HIToolbox 0x00007ff822948ee9 > >>>>>>> _ZL15Convert1CGEventh + 246 > >>>>>>> > >>>>>>> 9 HIToolbox 0x00007ff822948d91 > >>>>>>> _ZL16MainLoopObserverjP14OpaqueEventRefPv + 41 > >>>>>>> > >>>>>>> 10 HIToolbox 0x00007ff822908bd2 > >>>>>>> _NotifyEventLoopObservers + 153 > >>>>>>> > >>>>>>> 11 HIToolbox 0x00007ff82292f726 > >>>>>>> RunCurrentEventLoopInMode + 228 > >>>>>>> > >>>>>>> 12 HIToolbox 0x00007ff82292f396 > >>>>>>> ReceiveNextEventCommon + 199 > >>>>>>> > >>>>>>> 13 HIToolbox 0x00007ff82292f2b3 > >>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70 > >>>>>>> > >>>>>>> 14 AppKit 0x00007ff81c136f33 > >>>>>>> _DPSNextEvent + 909 > >>>>>>> > >>>>>>> 15 AppKit 0x00007ff81c135db4 > >>>>>>> -[NSApplication(NSEvent) > >>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219 > >>>>>>> > >>>>>>> 16 grDevices.so 0x00000001086f7a3b > >>>>>>> input_handler + 155 > >>>>>>> > >>>>>>> 17 libR.dylib 0x0000000108b142cf > >>>>>>> Rstd_ReadConsole + 2127 > >>>>>>> > >>>>>>> 18 libR.dylib 0x0000000108a15b74 > >>>>>>> Rf_ReplIteration + 100 > >>>>>>> > >>>>>>> 19 libR.dylib 0x0000000108a174b1 > >>>>>>> R_ReplConsole + 161 > >>>>>>> > >>>>>>> 20 libR.dylib 0x0000000108a17402 > >>>>>>> run_Rmainloop + 82 > >>>>>>> > >>>>>>> 21 libR.dylib 0x0000000108a1753e > >>>>>>> Rf_mainloop + 14 > >>>>>>> > >>>>>>> 22 R 0x000000010847af5b main + 27 > >>>>>>> > >>>>>>> 23 dyld 0x00007ff818bde310 start + > >>>>>>> 2432 > >>>>>>> > >>>>>>> 1 HIToolbox 0x00007ff82292f0c2 > >>>>>>> _ZN15MenuBarInstance22RemoveAutoShowObserverEv + 30 > >>>>>>> > >>>>>>> 2 HIToolbox 0x00007ff8229467e3 > >>>>>>> SetMenuBarObscured + 115 > >>>>>>> > >>>>>>> 3 HIToolbox 0x00007ff82294d29e > >>>>>>> _ZN13HIApplication11FrontUILostEv + 34 > >>>>>>> > >>>>>>> 4 HIToolbox 0x00007ff822946622 > >>>>>>> _ZN13HIApplication15HandleActivatedEP14OpaqueEventRefhP15OpaqueWindowPtrh > >>>>>>> + 508 > >>>>>>> > >>>>>>> 5 HIToolbox 0x00007ff822940950 > >>>>>>> _ZN13HIApplication13EventObserverEjP14OpaqueEventRefPv + 182 > >>>>>>> > >>>>>>> 6 HIToolbox 0x00007ff822908bd2 > >>>>>>> _NotifyEventLoopObservers + 153 > >>>>>>> > >>>>>>> 7 HIToolbox 0x00007ff8229403e6 > >>>>>>> AcquireEventFromQueue + 494 > >>>>>>> > >>>>>>> 8 HIToolbox 0x00007ff82292f3ec > >>>>>>> ReceiveNextEventCommon + 285 > >>>>>>> > >>>>>>> 9 HIToolbox 0x00007ff82292f2b3 > >>>>>>> _BlockUntilNextEventMatchingListInModeWithFilter + 70 > >>>>>>> > >>>>>>> 10 AppKit 0x00007ff81c136f33 > >>>>>>> _DPSNextEvent + 909 > >>>>>>> > >>>>>>> 11 AppKit 0x00007ff81c135db4 > >>>>>>> -[NSApplication(NSEvent) > >>>>>>> _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1219 > >>>>>>> > >>>>>>> 12 grDevices.so 0x00000001086f7a77 > >>>>>>> input_handler + 215 > >>>>>>> > >>>>>>> 13 libR.dylib 0x0000000108b142cf > >>>>>>> Rstd_ReadConsole + 2127 > >>>>>>> > >>>>>>> 14 libR.dylib 0x0000000108a15b74 > >>>>>>> Rf_ReplIteration + 100 > >>>>>>> > >>>>>>> 15 libR.dylib 0x0000000108a174b1 > >>>>>>> R_ReplConsole + 161 > >>>>>>> > >>>>>>> 16 libR.dylib 0x0000000108a17402 > >>>>>>> run_Rmainloop + 82 > >>>>>>> > >>>>>>> 17 libR.dylib 0x0000000108a1753e > >>>>>>> Rf_mainloop + 14 > >>>>>>> > >>>>>>> 18 R 0x000000010847af5b main + 27 > >>>>>>> > >>>>>>> 19 dyld 0x00007ff818bde310 start + > >>>>>>> 2432 > >>>>>>> > >>>>>>> I am using R through Terminal in my Mac > >>>>>>> > >>>>>>>> sessionInfo() > >>>>>>> > >>>>>>> R version 4.2.1 (2022-06-23) > >>>>>>> > >>>>>>> Platform: x86_64-apple-darwin17.0 (64-bit) > >>>>>>> > >>>>>>> Running under: macOS Big Sur ... 10.16 > >>>>>>> > >>>>>>> > >>>>>>> Matrix products: default > >>>>>>> > >>>>>>> BLAS: > >>>>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib > >>>>>>> > >>>>>>> LAPACK: > >>>>>>> /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib > >>>>>>> > >>>>>>> > >>>>>>> locale: > >>>>>>> > >>>>>>> [1] C/UTF-8/C/C/C/C > >>>>>>> > >>>>>>> > >>>>>>> attached base packages: > >>>>>>> > >>>>>>> [1] stats graphics grDevices utils datasets methods base > >>>>>>> > >>>>>>> > >>>>>>> loaded via a namespace (and not attached): > >>>>>>> > >>>>>>> [1] compiler_4.2.1 > >>>>>>> > >>>>>>> Is there any way to stop/hide these messages? > >>>>>>> > >>>>>>> Thanks for your time. > >>>>>>> > >>>>>>> _______________________________________________ > >>>>>>> R-SIG-Mac mailing list > >>>>>>> R-SIG-Mac@r-project.org > >>>>>>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 > >>>>>>> > >>>>>> > >>>> > >>>> _______________________________________________ > >>>> R-SIG-Mac mailing list > >>>> R-SIG-Mac@r-project.org > >>>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 > >>> > >>> -- > >>> Sent from my phone. Please excuse my brevity. > >>> > >>> _______________________________________________ > >>> R-SIG-Mac mailing list > >>> R-SIG-Mac@r-project.org > >>> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 > >> -- > >> Federico Calboli > >> Tutkija > >> Genomiikka ja jalostus, Luonnonvarakeskus > >> +358295322656 > >> _______________________________________________ > >> R-SIG-Mac mailing list > >> R-SIG-Mac@r-project.org > >> https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-mac&data=05%7C01%7Cfederico.calboli%40luke.fi%7C2545a878fd4f452ed61f08db0cecefa0%7C7c14dfa4c0fc47259f0476a443deb095%7C0%7C0%7C638117983997435219%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=TIW9D9MUWNyVczTdxDMF0U79yrB%2FlVd3P7rZ%2FVQdY%2FM%3D&reserved=0 > > > > -- > > Brian D. Ripley, rip...@stats.ox.ac.uk > > Emeritus Professor of Applied Statistics, University of Oxford > > > > -- > Federico Calboli > Tutkija > Genomiikka ja jalostus, Luonnonvarakeskus > +358295322656 > > > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac