Hi Nachiket - If you look at the help file for rjmcmc.bm, there is a worked example that shows you how to use various functions to help make plots of your results. There is also a different example here:
http://bodegaphylo.wikispot.org/Morphological_evolution_in_R Hope this helps - Luke On Mar 25, 2014, at 5:04 PM, Nachiket Shankar <[email protected]> wrote: > Dear All, > I want to use rjmcmc.bm to identify rate shifts in my tree, but I'm not sure > of all the details of analysing the results. Currently, I have a tree with > 134 taxa - rooted by mid-point rooting and rendered ultrametric using the > function chronopl with lambda=1. > > I have run rjmcmc.bm for 10 million generation and have got two output files. > I'm kind of new to Bayesian MCMC analysis using tracer / coda. So, I'm not > sure how to interpret the results and couldn't find any online tutorial for > this function. Please let me know if you can help! > > <137_name_key.csv><archaea.nex.con.tre><data.csv><rjmcmc.bm.R>_______________________________________________ > R-sig-phylo mailing list - [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/[email protected]/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/
