Messages by Date
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2023/11/29
[R-sig-phylo] An Introduction to Spatial Eco-Phylogenetics and Comparative Methods (SECM01)
Oliver Hooker
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2023/11/06
[R-sig-phylo] Comparing rates from fitContinuous in geiger
Jeremiah Scott
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2023/10/31
Re: [R-sig-phylo] HPD in threshBayes function (phytools)
Leonardo Matheus Servino
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2023/10/30
Re: [R-sig-phylo] HPD in threshBayes function (phytools)
Liam J. Revell
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2023/10/30
[R-sig-phylo] HPD in threshBayes function (phytools)
Leonardo Matheus Servino
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2023/10/29
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
Russell Engelman
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2023/10/28
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
Russell Engelman
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2023/10/28
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
Liam J. Revell
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2023/10/28
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
William Gearty
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2023/10/28
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
Russell Engelman
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2023/10/27
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
William Gearty
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2023/10/26
Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
Emmanuel Paradis
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2023/10/26
[R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot
Russell Engelman
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2023/10/21
[R-sig-phylo] Postdoc in phylogenetic comparative methods at UMiami
Liam J. Revell
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2023/09/20
[R-sig-phylo] The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02)
Oliver Hooker
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2023/09/02
[R-sig-phylo] Assistant Professor position in phylogenetics at CSU
Sloan,Dan
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2023/08/22
Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap
Felipe Rossetto
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2023/08/22
Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap
Liam J. Revell
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2023/08/22
[R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap
Felipe Rossetto
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2023/08/16
[R-sig-phylo] Warning NaNs produced in hisse
Leonardo Matheus Servino
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2023/08/11
Re: [R-sig-phylo] print circles in the tree nodes coloring by PP
Pedro Taucce
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2023/08/11
Re: [R-sig-phylo] print circles in the tree nodes coloring by PP
Liam J. Revell
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2023/08/10
[R-sig-phylo] print circles in the tree nodes coloring by PP
Pedro Taucce
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2023/08/08
[R-sig-phylo] ONLINE COURSE – Machine Learning with R (Intermediate – Advanced) (MLIA01)
Oliver Hooker
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2023/08/03
[R-sig-phylo] Warnings after running brm
Leonardo Matheus Servino
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2023/07/28
Re: [R-sig-phylo] Possible problem with Scaled likelihoods in ancestral state estimation
Liam J. Revell
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2023/07/28
[R-sig-phylo] Possible problem with Scaled likelihoods in ancestral state estimation
Laura Schaedler
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2023/07/21
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 186, Issue 3
Oscar Johnson
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2023/07/21
Re: [R-sig-phylo] Correlation coefficient from a PGLS
Emmanuel Paradis
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2023/07/18
[R-sig-phylo] Correlation coefficient from a PGLS
Lior Glick
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2023/07/02
[R-sig-phylo] Ordination of discrete traits in threshBayes
Stênio Ítalo Araújo Foerster
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2023/06/28
[R-sig-phylo] kdetrees
Vojtěch Zeisek
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2023/06/24
Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file
Felipe Rossetto
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2023/06/24
Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file
Liam J. Revell
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2023/06/24
[R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file
Felipe Rossetto
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2023/06/22
[R-sig-phylo] Title: Error in make.simmap() function: argument of length 0
Souza Ferreira, Rachel
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2023/06/01
Re: [R-sig-phylo] Including intraspecific variation (SE) in geiger::fitContinousMCMC
Julien Clavel
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2023/06/01
[R-sig-phylo] Including intraspecific variation (SE) in geiger::fitContinousMCMC
Diogo B. Provete
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2023/05/17
Re: [R-sig-phylo] Error in phytools rateshift
Lior Glick
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2023/05/17
Re: [R-sig-phylo] Error in phytools rateshift
Liam J. Revell
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2023/05/17
Re: [R-sig-phylo] Error in phytools rateshift
Lior Glick
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2023/05/16
Re: [R-sig-phylo] Error in phytools rateshift
Liam J. Revell
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2023/05/16
Re: [R-sig-phylo] Error in phytools rateshift
Liam J. Revell
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2023/05/16
[R-sig-phylo] Error in phytools rateshift
Lior Glick
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2023/04/18
Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state
Rafael S Marcondes
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2023/04/18
Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state
Liam J. Revell
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2023/04/18
[R-sig-phylo] Using results of make.simmap to color edges by most likely state
Rafael S Marcondes
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2023/03/07
Re: [R-sig-phylo] Parallelization in ape::dist.topo
Emmanuel Paradis
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2023/03/07
Re: [R-sig-phylo] Parallelization in ape::dist.topo
Vojtěch Zeisek
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2023/03/07
Re: [R-sig-phylo] Parallelization in ape::dist.topo
Vojtěch Zeisek
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2023/03/07
Re: [R-sig-phylo] Parallelization in ape::dist.topo
Vojtěch Zeisek
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2023/03/07
Re: [R-sig-phylo] Parallelization in ape::dist.topo
Klaus Schliep
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2023/03/07
[R-sig-phylo] Parallelization in ape::dist.topo
Martin R. Smith
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2023/03/07
Re: [R-sig-phylo] Parallelization in ape::dist.topo
Emmanuel Paradis
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2023/03/06
[R-sig-phylo] Evolutionary Quantitative Genetics Workshop 2023
Joe Felsenstein
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2023/03/06
[R-sig-phylo] Parallelization in ape::dist.topo
Vojtěch Zeisek
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2023/03/05
Re: [R-sig-phylo] Estimating the posterior prob of the ancestral states of two nodes
Liam J. Revell
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2023/03/05
[R-sig-phylo] Estimating the posterior prob of the ancestral states of two nodes
Sishuo Wang
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2023/03/01
[R-sig-phylo] Call for papers: Special Issue featuring linking micro- and macroevolution in Journal of Evolutionary Biology
Masahito Tsuboi
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2023/02/28
Re: [R-sig-phylo] NAMESPACE issue
Liam J. Revell
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2023/02/28
Re: [R-sig-phylo] NAMESPACE issue
Kevin Arbuckle
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2023/02/28
Re: [R-sig-phylo] NAMESPACE issue
Emmanuel Paradis
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2023/02/28
[R-sig-phylo] NAMESPACE issue
Kevin Arbuckle
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2023/02/10
[R-sig-phylo] PhD projects: 1. wildlife trade 2. Placenta evolution
Isabella Capellini
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2023/02/05
Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances
Jarrett Phillips
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2023/02/05
Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances
Viechtbauer, Wolfgang (NP)
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2023/02/05
[R-sig-phylo] Fwd: Extracting interspecific distances as a matrix
Eliot Miller
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2023/02/05
Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances
Viechtbauer, Wolfgang (NP)
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2023/02/04
[R-sig-phylo] Generating a matrix of interspecfic genetic distances
Jarrett Phillips
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2023/01/27
Re: [R-sig-phylo] Evolutionary Quantitative Genetics Workshop 2023
Joe Felsenstein
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2023/01/27
[R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH02)
Oliver Hooker
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2023/01/24
[R-sig-phylo] Introduction to Multi’omics Data Analysis from Microbial Communities (MOMC01)
Oliver Hooker
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2023/01/19
[R-sig-phylo] Postdoc position on PCM of trait evolution in Stockholm/Sweden
Masahito Tsuboi
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2023/01/18
Re: [R-sig-phylo] Extract and summarise internal branch lengths for different samples
Liam J. Revell
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2023/01/18
Re: [R-sig-phylo] Extract and summarise internal branch lengths for different samples
Liam J. Revell
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2023/01/18
[R-sig-phylo] Extract and summarise internal branch lengths for different samples
Jhonny Capichoni Massante
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2023/01/17
[R-sig-phylo] phytools GitHub version
Liam J. Revell
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2023/01/17
Re: [R-sig-phylo] Extracting interspecific distances as a matrix
Eliot Miller
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2023/01/16
[R-sig-phylo] Extracting interspecific distances as a matrix
Jarrett Phillips
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2023/01/15
[R-sig-phylo] R phylogenetics workshop at UMass-Boston
Liam J. Revell
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2023/01/11
Re: [R-sig-phylo] Error in phytools - locate.fossil?
Lindsey Dehaan
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2023/01/11
Re: [R-sig-phylo] Error in phytools - locate.fossil?
Liam J. Revell
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2023/01/11
Re: [R-sig-phylo] Error in phytools - locate.fossil?
Lindsey Dehaan
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2023/01/10
Re: [R-sig-phylo] Error in phytools - locate.fossil?
Liam J. Revell
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2023/01/10
Re: [R-sig-phylo] Error in phytools - locate.fossil?
Liam J. Revell
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2023/01/10
[R-sig-phylo] Error in phytools - locate.fossil?
Lindsey Dehaan
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2023/01/10
Re: [R-sig-phylo] Counting and getting the age of cherries in a tree
Ivan Magalhaes
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2023/01/09
Re: [R-sig-phylo] Counting and getting the age of cherries in a tree
Liam J. Revell
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2023/01/09
[R-sig-phylo] Counting and getting the age of cherries in a tree
Ivan Magalhaes
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2022/12/14
Re: [R-sig-phylo] fitContinuous in Geiger
Liam J. Revell
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2022/12/14
[R-sig-phylo] fitContinuous in Geiger
William Brown
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2022/12/12
[R-sig-phylo] Stochastic differential equations with R school at Linkoping University, Sweden
Krzysztof Bartoszek
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2022/12/09
Re: [R-sig-phylo] Phylogenetic bubble plot
Liam J. Revell
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2022/12/09
[R-sig-phylo] Phylogenetic bubble plot
Saleh Rahimlou
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2022/11/17
Re: [R-sig-phylo] Estimating tip rates of molecular evolution
Jacob Berv
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2022/11/17
[R-sig-phylo] Estimating tip rates of molecular evolution
Karla Shikev
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2022/11/16
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete, trait
Klaus Schliep
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2022/11/14
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait
O'Meara, Brian C
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2022/11/14
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait
roee maor
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2022/11/13
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete, trait
Jonas Eberle
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2022/11/11
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 178, Issue 5
Krzysztof Kozak
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2022/11/10
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait
Jonas Eberle
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2022/11/10
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait (Krzysztof Bartoszek)
Krzysztof Bartoszek
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2022/11/09
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 178, Issue 3
Krzysztof Kozak
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2022/11/08
Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait
Liam J. Revell
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2022/11/08
[R-sig-phylo] ancestral state reconstruction with a complex discrete trait
Krzysztof Kozak
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2022/11/03
[R-sig-phylo] max tree depth in ace and fitMk
Martin Ramirez
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2022/11/01
Re: [R-sig-phylo] Extracting intraspecific and interspecific distances from dist.dna() object
Emmanuel Paradis
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2022/10/20
[R-sig-phylo] Bayesian Phylogenetic Analysis
Bruno Morais de Carvalho
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2022/10/19
Re: [R-sig-phylo] reply to alternative error structures in PGLS
jiyanzhu
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2022/10/18
Re: [R-sig-phylo] Extracting intraspecific and interspecific distances from dist.dna() object
Emmanuel Paradis
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2022/10/18
[R-sig-phylo] Extracting intraspecific and interspecific distances from dist.dna() object
Jarrett Phillips
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2022/10/18
[R-sig-phylo] reply to alternative error structures in PGLS
Luke Matthews
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2022/10/17
[R-sig-phylo] Alternative error structures in PGLS
jiyanzhu
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2022/10/10
[R-sig-phylo] Announcement SSB Standalone meeting
Alejandro Gonzalez Voyer
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2022/09/28
[R-sig-phylo] [2nd announcement] "Bioinformatics: The Next 20 Years" (Oct 27)
Emmanuel Paradis
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2022/08/05
[R-sig-phylo] Fwd: Postdoc Position: Phylogenetic Climate Modeling & 3D Morphometrics
David Bapst
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2022/07/06
[R-sig-phylo] Interpreting stochastic character mapping results
Lucas Eckert
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2022/05/30
[R-sig-phylo] ONLINE COURSE – Introduction to Machine Learning and Deep Learning using R (IMDL03)
Oliver Hooker
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2022/05/28
[R-sig-phylo] Generalising the concept of cherries
Graeme Lloyd
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2022/05/23
[R-sig-phylo] MK1 vs MK2 with phylogenetic uncertainty
Karla Shikev
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2022/03/13
Re: [R-sig-phylo] Interpretation of Y~X vs. X~Y and estimation of Pagel's Lambda using PGLSR
Ricardo Araújo
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2022/02/20
[R-sig-phylo] wrong behaviour of is.monophyletic() with duplicated labels
Emmanuel Paradis
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2022/01/23
[R-sig-phylo] PGLS incorporating weights and estimate of effect size
Alejandro Gonzalez Voyer
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2022/01/23
[R-sig-phylo] ape::muscle doesn't work with Muscle5
Vojtěch Zeisek
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2022/01/10
[R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH01)
Oliver Hooker
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2021/12/08
Re: [R-sig-phylo] issue with reading matrix in R package DispRity
Oliver Betz
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2021/12/06
Re: [R-sig-phylo] issue with reading matrix in R package DispRity
Liam J. Revell
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2021/12/06
Re: [R-sig-phylo] issue with reading matrix in R package DispRity
Marguerite Butler
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2021/12/06
[R-sig-phylo] issue with reading matrix in R package DispRity
Oliver Betz
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2021/11/27
Re: [R-sig-phylo] Substitution model rate matrix - how to read it?
Emmanuel Paradis
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2021/11/26
[R-sig-phylo] Substitution model rate matrix - how to read it?
Martin Fikáček
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2021/11/17
[R-sig-phylo] How to Report Results Across Multiple Trees?
Trevor Bak
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2021/11/04
Re: [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree
Miguel Verdú del Campo
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2021/11/04
Re: [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree
Liam J. Revell
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2021/11/04
[R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree
Miguel Verdú del Campo
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2021/11/03
Re: [R-sig-phylo] Trimming protein alignment
Vojtěch Zeisek
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2021/11/02
Re: [R-sig-phylo] Trimming protein alignment
Emmanuel Paradis
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2021/11/02
Re: [R-sig-phylo] Trimming protein alignment
Vojtěch Zeisek
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2021/11/02
Re: [R-sig-phylo] Trimming protein alignment
Vojtěch Zeisek
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2021/11/02
Re: [R-sig-phylo] Trimming protein alignment
Emmanuel Paradis
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2021/11/02
[R-sig-phylo] Trimming protein alignment
Vojtěch Zeisek
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2021/11/01
[R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH01)
Oliver Hooker
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2021/10/21
Re: [R-sig-phylo] Irregularity in PGLS Slope Driven By Scope of Taxon Selection
Julien Clavel
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2021/10/20
Re: [R-sig-phylo] Irregularity in PGLS Slope Driven By Scope of Taxon Selection
Julien Clavel
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2021/10/19
Re: [R-sig-phylo] Question regarding PGLS in caper
Alejandro Gonzalez Voyer
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2021/10/19
Re: [R-sig-phylo] Question regarding PGLS in caper
Julien Clavel
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2021/10/18
[R-sig-phylo] Question regarding PGLS in caper
Oliver Betz
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2021/10/18
[R-sig-phylo] PhD Studentship (STUDENTS WORLDWIDE): Parental care evolution
Isabella Capellini
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2021/09/19
Re: [R-sig-phylo] Data normalization
Jacob Berv
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2021/09/19
[R-sig-phylo] Data normalization
Ferenc Tibor Kagan
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2021/09/17
Re: [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths
Emmanuel Paradis
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2021/09/15
Re: [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths
Jacob Berv
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2021/09/14
[R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths
Diego Almeida-Silva
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2021/09/08
[R-sig-phylo] FREE 1 DAY INTRO TO R AND R STUDIO (FIRR01)
Oliver Hooker
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2021/09/07
Re: [R-sig-phylo] dist.nodes
Klaus Schliep
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2021/09/06
Re: [R-sig-phylo] dist.nodes
Emmanuel Paradis
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2021/09/06
[R-sig-phylo] dist.nodes
Nick Youngblut
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2021/09/04
Re: [R-sig-phylo] Codifying missing data and polymorphic state of characters in the same matrix
Liam J. Revell
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2021/09/04
[R-sig-phylo] Codifying missing data and polymorphic state of characters in the same matrix
Felipe Rossetto
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2021/08/25
Re: [R-sig-phylo] hurdle models
Krzysztof Bartoszek
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2021/08/24
Re: [R-sig-phylo] hurdle models
jonnations
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2021/08/23
[R-sig-phylo] hurdle models
Ted Stankowich
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2021/07/30
Re: [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R
Salvador Espada Hinojosa
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2021/07/29
[R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R
Oliver Hooker
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2021/07/08
Re: [R-sig-phylo] Model Selection and PGLS
Cecile Ane
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2021/07/07
Re: [R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/07/05
Re: [R-sig-phylo] phylogenetic correlation analysis
Oliver Betz
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2021/07/04
Re: [R-sig-phylo] Model Selection and PGLS
Julien Clavel
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2021/07/04
Re: [R-sig-phylo] Model Selection and PGLS
Simone Blomberg
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2021/07/04
Re: [R-sig-phylo] Model Selection and PGLS
Julien Clavel
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2021/07/04
Re: [R-sig-phylo] Model Selection and PGLS
Simone Blomberg
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2021/07/04
Re: [R-sig-phylo] Model Selection and PGLS
Theodore Garland
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2021/07/03
Re: [R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/07/02
Re: [R-sig-phylo] Model Selection and PGLS
Simone Blomberg
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2021/07/02
Re: [R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/07/02
Re: [R-sig-phylo] Model Selection and PGLS
Chris Organ
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2021/07/01
Re: [R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/07/01
Re: [R-sig-phylo] Model Selection and PGLS
Cecile Ane
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2021/06/30
Re: [R-sig-phylo] Model Selection and PGLS
Theodore Garland
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2021/06/30
Re: [R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/06/29
Re: [R-sig-phylo] Model Selection and PGLS
Cecile Ane
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2021/06/29
Re: [R-sig-phylo] Model Selection and PGLS
Theodore Garland
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2021/06/29
Re: [R-sig-phylo] Model Selection and PGLS
Theodore Garland
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2021/06/29
Re: [R-sig-phylo] Model Selection and PGLS
David Bapst
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2021/06/29
Re: [R-sig-phylo] Model Selection and PGLS
Nathan Upham
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2021/06/28
Re: [R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/06/28
Re: [R-sig-phylo] Model Selection and PGLS
Nathan Upham
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2021/06/28
[R-sig-phylo] Model Selection and PGLS
Russell Engelman
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2021/06/27
Re: [R-sig-phylo] Extracting sequences from DNAbin according to a condition
Emmanuel Paradis
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2021/06/27
Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object
Russell Engelman
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2021/06/27
[R-sig-phylo] Extracting sequences from DNAbin according to a condition
Jarrett Phillips
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2021/06/13
Re: [R-sig-phylo] phylogenetic correlation analysis
Cecile Ane
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2021/06/13
Re: [R-sig-phylo] phylogenetic correlation analysis
Joe Felsenstein
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2021/06/13
Re: [R-sig-phylo] phylogenetic correlation analysis
Theodore Garland
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2021/06/13
Re: [R-sig-phylo] phylogenetic correlation analysis
Julien Clavel
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2021/06/13
[R-sig-phylo] phylogenetic correlation analysis
Oliver Betz
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2021/06/11
Re: [R-sig-phylo] Degrees of Freedom in PGLS
Theodore Garland
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2021/06/11
[R-sig-phylo] Degrees of Freedom in PGLS
Russell Engelman
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2021/06/08
Re: [R-sig-phylo] Working with BTRTools or BTProcessR
Gregory Mutumi