r-sig-phylo  

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• 2018/08/12 Re: [R-sig-phylo] Question regarding log likelihood in OUCH package Liam J. Revell
• 2018/08/12 [R-sig-phylo] Question regarding log likelihood in OUCH package Danielle Miller
• 2018/08/11 [R-sig-phylo] Problems with as.phylo.treeshape (library apTreeshape) Matt Simenc
• 2018/08/09 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 127, Issue 4 roee maor
• 2018/08/08 Re: [R-sig-phylo] 3-category ordinal probit MCMCglmm model Theodore Garland
• 2018/08/08 [R-sig-phylo] 3-category ordinal probit MCMCglmm model Andrea Soriano
• 2018/08/03 Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient Nicolay Cunha
• 2018/08/01 Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient Masahito Tsuboi
• 2018/08/01 Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient jonnations
• 2018/07/31 Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient f . krah
• 2018/07/31 Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient Theodore Garland
• 2018/07/31 [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient Nicolay Cunha
• 2018/07/30 Re: [R-sig-phylo] p-value in pgls.Ives Iara Reinaldo Coriolano
• 2018/07/30 Re: [R-sig-phylo] p-value in pgls.Ives Liam J. Revell
• 2018/07/30 Re: [R-sig-phylo] Simulating tree from a given tree Liam J. Revell
• 2018/07/30 Re: [R-sig-phylo] Simulating tree from a given tree Eduardo Ascarrunz
• 2018/07/30 [R-sig-phylo] p-value in pgls.Ives Iara Reinaldo Coriolano
• 2018/07/29 [R-sig-phylo] p-value in pgls.Ives Iara Reinaldo Coriolano
• 2018/07/29 [R-sig-phylo] Simulating tree from a given tree Miguel.Verdu
• 2018/07/13 Re: [R-sig-phylo] Measuring Phylogenetic Signal Theodore Garland
• 2018/07/13 Re: [R-sig-phylo] Measuring Phylogenetic Signal Manabu Sakamoto
• 2018/07/13 Re: [R-sig-phylo] Measuring Phylogenetic Signal David Bapst
• 2018/07/13 Re: [R-sig-phylo] Measuring Phylogenetic Signal Theodore Garland
• 2018/07/13 Re: [R-sig-phylo] Measuring Phylogenetic Signal Liam J. Revell
• 2018/07/13 [R-sig-phylo] Measuring Phylogenetic Signal Alyson Brokaw
• 2018/07/09 Re: [R-sig-phylo] keeping states discrete when plotting HiSSE results Brian O'Meara
• 2018/07/03 [R-sig-phylo] keeping states discrete when plotting HiSSE results Bonnie Blaimer
• 2018/06/27 [R-sig-phylo] Bayou and surface Tree Plots Sandro Sehner
• 2018/06/25 Re: [R-sig-phylo] ape-package: unknown states in ace analyses? Théo Léger
• 2018/06/22 Re: [R-sig-phylo] ape-package: unknown states in ace analyses? Jacob Berv
• 2018/06/22 Re: [R-sig-phylo] ape-package: unknown states in ace analyses? Emmanuel Paradis
• 2018/06/22 Re: [R-sig-phylo] ape-package: unknown states in ace analyses? Emmanuel Paradis
• 2018/06/21 Re: [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm) Liam Kendall
• 2018/06/21 Re: [R-sig-phylo] ape-package: unknown states in ace analyses? Liam J. Revell
• 2018/06/21 [R-sig-phylo] ape-package: unknown states in ace analyses? Théo Léger
• 2018/06/21 Re: [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm) Jarrod Hadfield
• 2018/06/21 [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm) jonnations
• 2018/06/20 [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm) Liam Kendall
• 2018/06/20 Re: [R-sig-phylo] estimate ancestral state with OUwie models David Bapst
• 2018/06/19 Re: [R-sig-phylo] diversification rates with two traits present simultaneously Brian O'Meara
• 2018/06/18 Re: [R-sig-phylo] diversification rates with two traits present simultaneously Gilles Benjamin Leduc
• 2018/06/18 Re: [R-sig-phylo] diversification rates with two traits present simultaneously William Gearty
• 2018/06/18 [R-sig-phylo] diversification rates with two traits present simultaneously Elizabeth Christina Miller
• 2018/06/14 Re: [R-sig-phylo] estimate ancestral state with OUwie models Jacob Berv
• 2018/06/14 Re: [R-sig-phylo] estimate ancestral state with OUwie models Cecile Ane
• 2018/06/14 Re: [R-sig-phylo] estimate ancestral state with OUwie models David Bapst
• 2018/06/14 Re: [R-sig-phylo] estimate ancestral state with OUwie models David Bapst
• 2018/06/12 Re: [R-sig-phylo] estimate ancestral state with OUwie models Nick Matzke
• 2018/06/12 Re: [R-sig-phylo] estimate ancestral state with OUwie models Joe Felsenstein
• 2018/06/12 Re: [R-sig-phylo] estimate ancestral state with OUwie models Thomas F Hansen
• 2018/06/12 Re: [R-sig-phylo] estimate ancestral state with OUwie models John Soghigian
• 2018/06/12 Re: [R-sig-phylo] estimate ancestral state with OUwie models Simone Blomberg
• 2018/06/12 Re: [R-sig-phylo] estimate ancestral state with OUwie models Marguerite Butler
• 2018/06/11 Re: [R-sig-phylo] estimate ancestral state with OUwie models Simone Blomberg
• 2018/06/11 Re: [R-sig-phylo] estimate ancestral state with OUwie models Brian O'Meara
• 2018/06/11 Re: [R-sig-phylo] estimate ancestral state with OUwie models David Bapst
• 2018/06/11 Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package Sebastian Y . Müller
• 2018/06/10 Re: [R-sig-phylo] estimate ancestral state with OUwie models Lucas Jardim
• 2018/06/09 Re: [R-sig-phylo] estimate ancestral state with OUwie models Diogo B. Provete
• 2018/06/08 [R-sig-phylo] estimate ancestral state with OUwie models Vilela de Moraes e Silva, Bruno
• 2018/06/08 Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package Emmanuel Paradis
• 2018/06/08 Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package Klaus Schliep
• 2018/06/08 [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package Sebastian Y . Müller
• 2018/05/24 Re: [R-sig-phylo] remove phylogenetic signal from large dataset françois RIGAL
• 2018/05/23 Re: [R-sig-phylo] remove phylogenetic signal from large dataset Julien Clavel
• 2018/05/23 [R-sig-phylo] remove phylogenetic signal from large dataset fran?ois RIGAL
• 2018/05/15 Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions Juan Antonio Balbuena
• 2018/05/15 Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions Liam J. Revell
• 2018/05/15 Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions Juan Antonio Balbuena
• 2018/05/15 Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions Liam J. Revell
• 2018/05/15 Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions Liam J. Revell
• 2018/05/15 [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions Juan Antonio Balbuena
• 2018/05/14 Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di() Pedro Pequeno
• 2018/05/14 Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di() Liam J. Revell
• 2018/05/14 Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di() Graham Slater
• 2018/05/14 [R-sig-phylo] is.binary() says "FALSE" after using multi2di() Pedro Pequeno
• 2018/05/10 [R-sig-phylo] Postdoctoral position in R phylogenetics Liam J. Revell
• 2018/05/07 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Eliot Miller
• 2018/05/07 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? David Bapst
• 2018/05/04 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Rafael S Marcondes
• 2018/05/04 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Eliot Miller
• 2018/05/03 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Liam J. Revell
• 2018/05/03 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Theodore Garland
• 2018/05/03 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Liam J. Revell
• 2018/05/03 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? David Bapst
• 2018/05/02 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Brian O'Meara
• 2018/05/02 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? David Bapst
• 2018/05/02 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? David Bapst
• 2018/05/02 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Eliot Miller
• 2018/05/02 Re: [R-sig-phylo] Problem with negative ages in OUwie.boot? Rafael S Marcondes
• 2018/05/02 [R-sig-phylo] Problem with negative ages in OUwie.boot? Rafael S Marcondes
• 2018/04/27 [R-sig-phylo] Postdoc in PCM development in the Revell lab Liam J. Revell
• 2018/04/27 Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny Chris Law
• 2018/04/26 Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny Liam J. Revell
• 2018/04/26 Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny Brian O'Meara
• 2018/04/26 [R-sig-phylo] grafting chronograms onto backbone phylogeny Chris Law
• 2018/04/20 Re: [R-sig-phylo] Bounded Brownian model Florian Boucher
• 2018/04/19 [R-sig-phylo] Bounded Brownian model Roi Holzman
• 2018/04/16 [R-sig-phylo] Reading ASTRAL trees into R Tomas Fer
• 2018/04/15 Re: [R-sig-phylo] diversification rates Lilian Sayuri Ouchi de Melo
• 2018/04/15 Re: [R-sig-phylo] diversification rates Upham, Nathan
• 2018/04/14 Re: [R-sig-phylo] diversification rates William Gearty
• 2018/04/14 [R-sig-phylo] diversification rates Lilian Sayuri Ouchi de Melo
• 2018/04/10 Re: [R-sig-phylo] "Not of class phylo" error when lapply is used jschenk
• 2018/04/10 Re: [R-sig-phylo] "Not of class phylo" error when lapply is used Jacob Berv
• 2018/04/09 Re: [R-sig-phylo] "Not of class phylo" error when lapply is used jschenk
• 2018/04/09 Re: [R-sig-phylo] "Not of class phylo" error when lapply is used Emmanuel Paradis
• 2018/04/09 Re: [R-sig-phylo] "Not of class phylo" error when lapply is used Liam J. Revell
• 2018/04/09 [R-sig-phylo] "Not of class phylo" error when lapply is used jschenk
• 2018/04/07 [R-sig-phylo] quantitative state dependent diversification of another quantitative trait (Zach Culumber) krzysztofbartoszek
• 2018/04/05 Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Zach Culumber
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Masahito Tsuboi
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Marguerite Butler
• 2018/04/04 Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Julien Clavel
• 2018/04/04 Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Brian O'Meara
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Brian O'Meara
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Brian O'Meara
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Liam J. Revell
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Jacob Berv
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Rafael S Marcondes
• 2018/04/04 Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models William Gearty
• 2018/04/04 [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models Rafael S Marcondes
• 2018/04/04 [R-sig-phylo] quantitative state dependent diversification of another quantitative trait Zach Culumber
• 2018/03/28 Re: [R-sig-phylo] Detection association between traits Joe Felsenstein
• 2018/03/22 Re: [R-sig-phylo] correlation of binary and multistate Arbuckle Kevin .
• 2018/03/21 Re: [R-sig-phylo] correlation of binary and multistate Brian O'Meara
• 2018/03/21 [R-sig-phylo] correlation of binary and multistate John Denton
• 2018/03/20 [R-sig-phylo] Help for QuaSSE analysis (diversitree) Charles Pouchon
• 2018/03/20 [R-sig-phylo] Plot interactions which are fitted by PGLS models. Long, X.
• 2018/03/19 [R-sig-phylo] correlation of characters from stochastic maps John Denton
• 2018/03/13 Re: [R-sig-phylo] plot.cophylo: some edges missing Juan Antonio Balbuena
• 2018/03/13 Re: [R-sig-phylo] plot.cophylo: some edges missing Liam J. Revell
• 2018/03/13 Re: [R-sig-phylo] plot.cophylo: some edges missing Juan Antonio Balbuena
• 2018/03/13 Re: [R-sig-phylo] plot.cophylo: some edges missing Liam J. Revell
• 2018/03/13 [R-sig-phylo] plot.cophylo: some edges missing Juan Antonio Balbuena
• 2018/03/12 Re: [R-sig-phylo] Phylogenetic PCA and measurement error Rafael S Marcondes
• 2018/03/12 Re: [R-sig-phylo] Phylogenetic PCA and measurement error Liam J. Revell
• 2018/03/12 Re: [R-sig-phylo] Phylogenetic PCA and measurement error Graham Slater
• 2018/03/12 Re: [R-sig-phylo] Phylogenetic PCA and measurement error Joe Felsenstein
• 2018/03/11 Re: [R-sig-phylo] Phylogenetic PCA and measurement error Liam J. Revell
• 2018/03/11 [R-sig-phylo] Phylogenetic PCA and measurement error Rafael S Marcondes
• 2018/03/06 [R-sig-phylo] Some questions about PGLS analysis in 'caper' in R Long, X.
• 2018/02/23 [R-sig-phylo] problem matching data and tip.labels Bianca A Santini Gonzalez
• 2018/02/20 Re: [R-sig-phylo] Mean of Phenogram Through Time William Gearty
• 2018/02/20 Re: [R-sig-phylo] Mean of Phenogram Through Time William Gearty
• 2018/02/20 Re: [R-sig-phylo] problem with phylo.toBackbone Liam J. Revell
• 2018/02/20 Re: [R-sig-phylo] problem with phylo.toBackbone Liam J. Revell
• 2018/02/20 [R-sig-phylo] problem with phylo.toBackbone Felipe Rossetto
• 2018/02/20 [R-sig-phylo] Spider 1.5.0 released Rupert Collins
• 2018/02/19 Re: [R-sig-phylo] Suggestion for update of as.igraph.phylo Watal M. Iwasaki
• 2018/02/19 Re: [R-sig-phylo] Suggestion for update of as.igraph.phylo Emmanuel Paradis
• 2018/02/14 Re: [R-sig-phylo] importing trees from birdtree.org into R Agus Camacho
• 2018/02/13 [R-sig-phylo] Suggestion for update of as.igraph.phylo Watal M. Iwasaki
• 2018/02/13 Re: [R-sig-phylo] importing trees from birdtree.org into R Upham, Nathan
• 2018/02/13 [R-sig-phylo] Mean of Phenogram Through Time William Gearty
• 2018/02/13 Re: [R-sig-phylo] importing trees from birdtree.org into R Agus Camacho
• 2018/02/13 Re: [R-sig-phylo] importing trees from birdtree.org into R Klaus Schliep
• 2018/02/13 [R-sig-phylo] importing trees from birdtree.org into R Agus Camacho
• 2018/02/12 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2 Martin Smith
• 2018/02/09 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2 Eduardo Ascarrunz
• 2018/02/09 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 121, Issue 2 Matthews, Luke
• 2018/02/08 Re: [R-sig-phylo] Maximum likelihood time-scaling Emmanuel Paradis
• 2018/02/08 [R-sig-phylo] Not inferring homology within "absence" state in phylogenetic analysis Roland Sookias
• 2018/02/07 [R-sig-phylo] Maximum likelihood time-scaling Santiago Claramunt
• 2018/01/30 [R-sig-phylo] error with QuaSSE linear function for simulations Elizabeth Christina Miller
• 2018/01/20 Re: [R-sig-phylo] Specifying a polytomy at the root with no outgroup Yan Wong
• 2018/01/20 Re: [R-sig-phylo] Specifying a polytomy at the root with no outgroup Emmanuel Paradis
• 2018/01/19 [R-sig-phylo] Specifying a polytomy at the root with no outgroup Yan Wong
• 2018/01/11 [R-sig-phylo] ML tree search using continuous characters William Gelnaw
• 2018/01/11 [R-sig-phylo] rayDISC model not running in corHMM Arbuckle Kevin .
• 2018/01/04 [R-sig-phylo] plotting geologic time scale on circular tree roee maor
• 2018/01/03 Re: [R-sig-phylo] plotting geologic time scale on circular tree Liam J. Revell
• 2018/01/03 Re: [R-sig-phylo] plotting geologic time scale on circular tree Liam J. Revell
• 2018/01/03 [R-sig-phylo] plotting geologic time scale on circular tree Jacob Berv
• 2017/12/23 Re: [R-sig-phylo] color edges of internal nodes with a single child Emmanuel Paradis
• 2017/12/23 Re: [R-sig-phylo] color edges of internal nodes with a single child Emmanuel Paradis
• 2017/12/20 [R-sig-phylo] color edges of internal nodes with a single child Walter, Mathias
• 2017/12/18 Re: [R-sig-phylo] threshDIC value error: Inf for DIC Values David Bapst
• 2017/12/18 [R-sig-phylo] threshDIC value error: Inf for DIC Values Aja Carter
• 2017/12/15 Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Klaus Schliep
• 2017/12/15 Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Cecile Ane
• 2017/12/15 Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Max Farrell
• 2017/12/15 Re: [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Cecile Ane
• 2017/12/15 [R-sig-phylo] Rescaling a cophenetic matrix based on the Early Burst Model? Max Farrell
• 2017/12/14 Re: [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
• 2017/12/14 Re: [R-sig-phylo] Will phyloXML in R be useful? Hilmar Lapp
• 2017/12/14 Re: [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
• 2017/12/14 [R-sig-phylo] PhD studentship in evolutionary anthropology STREET, SALLY E.
• 2017/12/13 Re: [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
• 2017/12/12 Re: [R-sig-phylo] Will phyloXML in R be useful? Daniel Fulop
• 2017/12/12 [R-sig-phylo] Will phyloXML in R be useful? George Vega Yon
• 2017/12/08 [R-sig-phylo] Ape pascal de Clarens
• 2017/12/07 [R-sig-phylo] tidytree package Yu, Guangchuang
• 2017/12/07 Re: [R-sig-phylo] ape Emmanuel Paradis
• 2017/12/07 [R-sig-phylo] ape pascal de Clarens
• 2017/12/03 Re: [R-sig-phylo] RMesquite package Ayelet Salman
• 2017/12/01 Re: [R-sig-phylo] RMesquite package Hilmar Lapp
• 2017/11/30 [R-sig-phylo] Shimodaira-Hasegawa test using per site log likelihood Felipe Rossetto
• 2017/11/28 [R-sig-phylo] Threshold DIC Value Error - Inf for DIC values Aja Carter
• 2017/11/15 [R-sig-phylo] Evolution 2018 symposium on PCM advances Antigoni Kaliontzopoulou

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