r-sig-phylo

Messages by Date

2021/12/06 Re: [R-sig-phylo] issue with reading matrix in R package DispRity Liam J. Revell
2021/12/06 Re: [R-sig-phylo] issue with reading matrix in R package DispRity Marguerite Butler
2021/12/06 [R-sig-phylo] issue with reading matrix in R package DispRity Oliver Betz
2021/11/27 Re: [R-sig-phylo] Substitution model rate matrix - how to read it? Emmanuel Paradis
2021/11/26 [R-sig-phylo] Substitution model rate matrix - how to read it? Martin Fikáček
2021/11/17 [R-sig-phylo] How to Report Results Across Multiple Trees? Trevor Bak
2021/11/04 Re: [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree Miguel Verdú del Campo
2021/11/04 Re: [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree Liam J. Revell
2021/11/04 [R-sig-phylo] Simulate trait evolution with different phylogenetic signal along a tree Miguel Verdú del Campo
2021/11/03 Re: [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
2021/11/02 Re: [R-sig-phylo] Trimming protein alignment Emmanuel Paradis
2021/11/02 Re: [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
2021/11/02 Re: [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
2021/11/02 Re: [R-sig-phylo] Trimming protein alignment Emmanuel Paradis
2021/11/02 [R-sig-phylo] Trimming protein alignment Vojtěch Zeisek
2021/11/01 [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH01) Oliver Hooker
2021/10/21 Re: [R-sig-phylo] Irregularity in PGLS Slope Driven By Scope of Taxon Selection Julien Clavel
2021/10/20 Re: [R-sig-phylo] Irregularity in PGLS Slope Driven By Scope of Taxon Selection Julien Clavel
2021/10/19 Re: [R-sig-phylo] Question regarding PGLS in caper Alejandro Gonzalez Voyer
2021/10/19 Re: [R-sig-phylo] Question regarding PGLS in caper Julien Clavel
2021/10/18 [R-sig-phylo] Question regarding PGLS in caper Oliver Betz
2021/10/18 [R-sig-phylo] PhD Studentship (STUDENTS WORLDWIDE): Parental care evolution Isabella Capellini
2021/09/19 Re: [R-sig-phylo] Data normalization Jacob Berv
2021/09/19 [R-sig-phylo] Data normalization Ferenc Tibor Kagan
2021/09/17 Re: [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths Emmanuel Paradis
2021/09/15 Re: [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths Jacob Berv
2021/09/14 [R-sig-phylo] Ancestral state reconstruction, polytomies and the absence of branch lengths Diego Almeida-Silva
2021/09/08 [R-sig-phylo] FREE 1 DAY INTRO TO R AND R STUDIO (FIRR01) Oliver Hooker
2021/09/07 Re: [R-sig-phylo] dist.nodes Klaus Schliep
2021/09/06 Re: [R-sig-phylo] dist.nodes Emmanuel Paradis
2021/09/06 [R-sig-phylo] dist.nodes Nick Youngblut
2021/09/04 Re: [R-sig-phylo] Codifying missing data and polymorphic state of characters in the same matrix Liam J. Revell
2021/09/04 [R-sig-phylo] Codifying missing data and polymorphic state of characters in the same matrix Felipe Rossetto
2021/08/25 Re: [R-sig-phylo] hurdle models Krzysztof Bartoszek
2021/08/24 Re: [R-sig-phylo] hurdle models jonnations
2021/08/23 [R-sig-phylo] hurdle models Ted Stankowich
2021/07/30 Re: [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R Salvador Espada Hinojosa
2021/07/29 [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R Oliver Hooker
2021/07/08 Re: [R-sig-phylo] Model Selection and PGLS Cecile Ane
2021/07/07 Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/07/05 Re: [R-sig-phylo] phylogenetic correlation analysis Oliver Betz
2021/07/04 Re: [R-sig-phylo] Model Selection and PGLS Julien Clavel
2021/07/04 Re: [R-sig-phylo] Model Selection and PGLS Simone Blomberg
2021/07/04 Re: [R-sig-phylo] Model Selection and PGLS Julien Clavel
2021/07/04 Re: [R-sig-phylo] Model Selection and PGLS Simone Blomberg
2021/07/04 Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
2021/07/03 Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/07/02 Re: [R-sig-phylo] Model Selection and PGLS Simone Blomberg
2021/07/02 Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/07/02 Re: [R-sig-phylo] Model Selection and PGLS Chris Organ
2021/07/01 Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/07/01 Re: [R-sig-phylo] Model Selection and PGLS Cecile Ane
2021/06/30 Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
2021/06/30 Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/06/29 Re: [R-sig-phylo] Model Selection and PGLS Cecile Ane
2021/06/29 Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
2021/06/29 Re: [R-sig-phylo] Model Selection and PGLS Theodore Garland
2021/06/29 Re: [R-sig-phylo] Model Selection and PGLS David Bapst
2021/06/29 Re: [R-sig-phylo] Model Selection and PGLS Nathan Upham
2021/06/28 Re: [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/06/28 Re: [R-sig-phylo] Model Selection and PGLS Nathan Upham
2021/06/28 [R-sig-phylo] Model Selection and PGLS Russell Engelman
2021/06/27 Re: [R-sig-phylo] Extracting sequences from DNAbin according to a condition Emmanuel Paradis
2021/06/27 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Russell Engelman
2021/06/27 [R-sig-phylo] Extracting sequences from DNAbin according to a condition Jarrett Phillips
2021/06/13 Re: [R-sig-phylo] phylogenetic correlation analysis Cecile Ane
2021/06/13 Re: [R-sig-phylo] phylogenetic correlation analysis Joe Felsenstein
2021/06/13 Re: [R-sig-phylo] phylogenetic correlation analysis Theodore Garland
2021/06/13 Re: [R-sig-phylo] phylogenetic correlation analysis Julien Clavel
2021/06/13 [R-sig-phylo] phylogenetic correlation analysis Oliver Betz
2021/06/11 Re: [R-sig-phylo] Degrees of Freedom in PGLS Theodore Garland
2021/06/11 [R-sig-phylo] Degrees of Freedom in PGLS Russell Engelman
2021/06/08 Re: [R-sig-phylo] Working with BTRTools or BTProcessR Gregory Mutumi
2021/06/08 Re: [R-sig-phylo] Working with BTRTools or BTProcessR Liam J. Revell
2021/06/08 [R-sig-phylo] Working with BTRTools or BTProcessR Gregory Mutumi
2021/06/08 Re: [R-sig-phylo] Recovering rate estimates from ape::ace Liam J. Revell
2021/06/08 Re: [R-sig-phylo] Recovering rate estimates from ape::ace Liam J. Revell
2021/06/08 Re: [R-sig-phylo] Recovering rate estimates from ape::ace Rafael S Marcondes
2021/06/07 Re: [R-sig-phylo] Recovering rate estimates from ape::ace Liam J. Revell
2021/06/07 [R-sig-phylo] Recovering rate estimates from ape::ace Rafael S Marcondes
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Russell Engelman
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Liam J. Revell
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Mike Collyer
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Russell Engelman
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Eliot Miller
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Liam J. Revell
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Liam J. Revell
2021/06/04 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Liam J. Revell
2021/06/03 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Klaus Schliep
2021/06/02 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Nathan Upham
2021/06/02 Re: [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Eliot Miller
2021/06/02 [R-sig-phylo] Using bind.tip and lapply on a multiPhylo object Russell Engelman
2021/05/31 Re: [R-sig-phylo] question regarding PGLS Julien Clavel
2021/05/30 Re: [R-sig-phylo] question regarding PGLS Simone Blomberg
2021/05/30 Re: [R-sig-phylo] question regarding PGLS Liam J. Revell
2021/05/30 Re: [R-sig-phylo] question regarding PGLS Julien Clavel
2021/05/30 [R-sig-phylo] question regarding PGLS Oliver Betz
2021/05/28 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Julien Clavel
2021/05/28 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Marguerite Butler
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Graham Slater
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Joe Felsenstein
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Gabriel Ferreira
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Joe Felsenstein
2021/05/27 Re: [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Julien Clavel
2021/05/27 [R-sig-phylo] If my trait X cannot be regressed by body size, how can I rescue residuals corrected by the phylogeny and SE? Gabriel Ferreira
2021/05/21 Re: [R-sig-phylo] Phylogenetic network / ARG representation in ape Yan Wong
2021/05/21 Re: [R-sig-phylo] Phylogenetic network / ARG representation in ape Emmanuel Paradis
2021/05/20 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/20 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/20 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/19 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/18 Re: [R-sig-phylo] Fitting models with continous characteres O'Meara, Brian C
2021/05/18 [R-sig-phylo] Phylogenetic network / ARG representation in ape Yan Wong
2021/05/18 Re: [R-sig-phylo] Error in Fitting OU Model in R Emmanuel Paradis
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] phylogenetic correction and MCMC model Jarrod Hadfield
2021/05/17 [R-sig-phylo] phylogenetic correction and MCMC model David Costantini
2021/05/17 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Emmanuel Paradis
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Emmanuel Paradis
2021/05/16 [R-sig-phylo] Fitting models with continous characteres Simon Lobos
2021/05/16 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/15 Re: [R-sig-phylo] How to sort trait data according to tree Marguerite Butler
2021/05/15 [R-sig-phylo] How to sort trait data according to tree Oliver Betz
2021/05/13 Re: [R-sig-phylo] suspected error in hisse:::TransMatMakerMuHiSSE() roee maor
2021/05/13 [R-sig-phylo] Fwd: suspected error in hisse:::TransMatMakerMuHiSSE() Jeremy Michael Beaulieu
2021/05/13 Re: [R-sig-phylo] suspected error in hisse:::TransMatMakerMuHiSSE() roee maor
2021/05/12 [R-sig-phylo] suspected error in hisse:::TransMatMakerMuHiSSE() roee maor
2021/04/26 Re: [R-sig-phylo] Extract singleton haplotypes with pegas::haplotype() Emmanuel Paradis
2021/04/26 [R-sig-phylo] Extract singleton haplotypes with pegas::haplotype() Jarrett Phillips
2021/04/26 [R-sig-phylo] Are geiger:dtt p-values one-tailed? Roberto Marquez
2021/04/26 Re: [R-sig-phylo] ape: error in pcoa Juan Antonio Balbuena
2021/04/24 Re: [R-sig-phylo] ape: error in pcoa Emmanuel Paradis
2021/04/23 [R-sig-phylo] ape: error in pcoa Juan Antonio Balbuena
2021/04/22 Re: [R-sig-phylo] Number of parameters in Simmap Adrià Bellvert
2021/04/21 Re: [R-sig-phylo] Number of parameters in Simmap Alejandro Gonzalez Voyer
2021/04/21 [R-sig-phylo] Number of parameters in Simmap Adrià Bellvert
2021/04/14 Re: [R-sig-phylo] Testing between categories with species values in each one Julien Clavel
2021/04/12 Re: [R-sig-phylo] Testing between categories with species values in each one Juan Jose Lagos Oviedo
2021/04/09 Re: [R-sig-phylo] Testing between categories with species values in each one Julien Clavel
2021/04/09 [R-sig-phylo] Testing between categories with species values in each one Juan Jose Lagos Oviedo
2021/04/08 Re: [R-sig-phylo] Changing the color of text and nodes in arc.cladelabels in phytools Russell Engelman
2021/04/07 [R-sig-phylo] Moran's Eigenvector Maps Saleh Rahimlou
2021/04/06 [R-sig-phylo] phangorn Krzysztof Bartoszek
2021/04/06 Re: [R-sig-phylo] phangorn Klaus Schliep
2021/04/05 Re: [R-sig-phylo] Changing the color of text and nodes in arc.cladelabels in phytools Liam J. Revell
2021/04/05 [R-sig-phylo] Changing the color of text and nodes in arc.cladelabels in phytools Russell Engelman
2021/03/21 Re: [R-sig-phylo] units of sigsq Marguerite Butler
2021/03/19 Re: [R-sig-phylo] units of sigsq Joe Felsenstein
2021/03/19 Re: [R-sig-phylo] units of sigsq O'Meara, Brian C
2021/03/19 Re: [R-sig-phylo] units of sigsq Marguerite Butler
2021/03/19 Re: [R-sig-phylo] units of sigsq Joe Felsenstein
2021/03/19 Re: [R-sig-phylo] units of sigsq Theodore Garland
2021/03/19 Re: [R-sig-phylo] units of sigsq Joe Felsenstein
2021/03/19 Re: [R-sig-phylo] units of sigsq Karla Shikev
2021/03/19 Re: [R-sig-phylo] units of sigsq Florian Boucher
2021/03/19 [R-sig-phylo] units of sigsq Karla Shikev
2021/03/08 [R-sig-phylo] open PhD position Krzysztof Bartoszek
2021/03/04 Re: [R-sig-phylo] de Villemereuil et al. 2012 in R Karla Shikev
2021/03/03 Re: [R-sig-phylo] de Villemereuil et al. 2012 in R Simone Blomberg
2021/03/03 [R-sig-phylo] de Villemereuil et al. 2012 in R Karla Shikev
2021/02/18 Re: [R-sig-phylo] identifying phylogenetically equivalent nodes Eliot Miller
2021/02/18 Re: [R-sig-phylo] identifying phylogenetically equivalent nodes Emmanuel Paradis
2021/02/17 [R-sig-phylo] identifying phylogenetically equivalent nodes Jacob Berv
2021/01/29 Re: [R-sig-phylo] Nonsensical likelihoods returned when using the 'ace' function and the 'all rates different' model in the R package: 'Ape' Emmanuel Paradis
2021/01/28 [R-sig-phylo] Nonsensical likelihoods returned when using the 'ace' function and the 'all rates different' model in the R package: 'Ape' Joseph Keating
2021/01/27 [R-sig-phylo] ace function Saleh Rahimlou
2021/01/26 Re: [R-sig-phylo] Phylogenetic Signal in Internal Node Data Emmanuel Paradis
2021/01/26 Re: [R-sig-phylo] Phylogenetic Signal in Internal Node Data Theodore Garland
2021/01/26 [R-sig-phylo] Phylogenetic Signal in Internal Node Data Matthew Helmus
2021/01/21 [R-sig-phylo] phylogenetic distribution of a continuous trait Karla Shikev
2021/01/19 Re: [R-sig-phylo] Plotting phylogenetic tree Emmanuel Paradis
2021/01/19 [R-sig-phylo] Plotting phylogenetic tree Saleh Rahimlou
2021/01/03 Re: [R-sig-phylo] Error in corFactor when running gls to obtain lambda Emmanuel Paradis
2020/12/16 [R-sig-phylo] Error in corFactor when running gls to obtain lambda chris pestana
2020/12/03 Re: [R-sig-phylo] host ape source code on GitHub? Liam J. Revell
2020/12/03 [R-sig-phylo] host ape source code on GitHub? Nick Youngblut
2020/11/26 [R-sig-phylo] NERC PhD project: parental care evolution Isabella Capellini
2020/11/25 [R-sig-phylo] Fundamentals of populations genetics using R (FOPG01) Oliver Hooker
2020/11/25 [R-sig-phylo] Bayesian hierarchical modelling using R (IBHM05) Oliver Hooker
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor nu35
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/11/18 Re: [R-sig-phylo] singularity with pgls and ordinal factor Liam J. Revell
2020/11/18 [R-sig-phylo] singularity with pgls and ordinal factor Ted Stankowich
2020/10/27 [R-sig-phylo] Phylogenetically aligned component analysis Mike Collyer
2020/10/25 Re: [R-sig-phylo] error with bind.tree + ladderize Emmanuel Paradis
2020/10/22 [R-sig-phylo] error with bind.tree + ladderize Joseph Brown
2020/10/20 Re: [R-sig-phylo] Multi2di still not generating equiprobable trees Emmanuel Paradis
2020/10/19 [R-sig-phylo] Multi2di still not generating equiprobable trees Yan Wong
2020/09/24 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Liam J. Revell
2020/09/24 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Julien Clavel
2020/09/24 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal David Bapst
2020/09/23 Re: [R-sig-phylo] evolutionary rate for species with low phylogenetic signal Karla Shikev

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