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• [R-sig-phylo] Developing R Packages and CRAN Publishing - Livestream Seminar Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Free Seminars: Machine Learning and Data Visualization Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Online Course: Deep Learning for the Life Sciences Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Join us in Poland for the Landscape Genomics course in January 2025! i...@physalia-courses.org
• [R-sig-phylo] online course - Multivariate Data Analysis with R and vegan i...@physalia-courses.org
• [R-sig-phylo] Multidimensional Phenotypic Evolution – Online Course (10-14 March 2025) i...@physalia-courses.org
• [R-sig-phylo] Generalized Linear Models In R course - 24-28 February i...@physalia-courses.org
• [R-sig-phylo] Trait-dependence for an extinct clade Joseph Keating via R-sig-phylo
  • Re: [R-sig-phylo] Trait-dependence for an extinct clade Hunt, Gene via R-sig-phylo
  • Re: [R-sig-phylo] Trait-dependence for an extinct clade Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] Trait-dependence for an extinct clade Chris Organ
  • Re: [R-sig-phylo] Trait-dependence for an extinct clade Joseph Keating via R-sig-phylo
• [R-sig-phylo] Online Seminar: Introduction to Git Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Phylogenomics course (online) i...@physalia-courses.org
• [R-sig-phylo] Error using bayestraits via btw package in r Leonardo Matheus Servino
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Leonardo Matheus Servino
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Leonardo Matheus Servino
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Leonardo Matheus Servino
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Sishuo Wang via R-sig-phylo
  • Re: [R-sig-phylo] Error using bayestraits via btw package in r Leonardo Matheus Servino
• [R-sig-phylo] Course: Single Cell Data Analysis - Last chance Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Handling negative values_phyl.pca function Jovana Malikovic
  • Re: [R-sig-phylo] Handling negative values_phyl.pca function Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] Handling negative values_phyl.pca function Liam J. Revell
  • Re: [R-sig-phylo] Handling negative values_phyl.pca function Julien Clavel
• [R-sig-phylo] creating phylo object from an edge table Alex Skeels
  • Re: [R-sig-phylo] creating phylo object from an edge table Nick Matzke
  • Re: [R-sig-phylo] creating phylo object from an edge table Liam J. Revell
  • Re: [R-sig-phylo] creating phylo object from an edge table Alex Skeels
• [R-sig-phylo] Single Cell Data Analysis - Livestream Seminar Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Model-averaging corHMM models? Rafael S Marcondes
  • Re: [R-sig-phylo] Model-averaging corHMM models? O'Meara, Brian C via R-sig-phylo
  • Re: [R-sig-phylo] Model-averaging corHMM models? Liam J. Revell
  • Re: [R-sig-phylo] Model-averaging corHMM models? James Boyko
  • Re: [R-sig-phylo] Model-averaging corHMM models? O'Meara, Brian C via R-sig-phylo
  • Re: [R-sig-phylo] Model-averaging corHMM models? Rafael S Marcondes
  • Re: [R-sig-phylo] Model-averaging corHMM models? Liam J. Revell
• [R-sig-phylo] Optimization process in fitMk Chen, Ting-Wen
  • Re: [R-sig-phylo] Optimization process in fitMk Liam J. Revell
• [R-sig-phylo] mvMORPH: mvgls parameter extraction and unreliable solution in mvOU Paulo Mateus Martins
  • Re: [R-sig-phylo] mvMORPH: mvgls parameter extraction and unreliable solution in mvOU Michael Zyphur via R-sig-phylo
  • Re: [R-sig-phylo] mvMORPH: mvgls parameter extraction and unreliable solution in mvOU Julien Clavel
  • Re: [R-sig-phylo] mvMORPH: mvgls parameter extraction and unreliable solution in mvOU Paulo Mateus Martins
• [R-sig-phylo] Online course: Single Cell Data Analysis, Nov 26 Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Regime class in the OUwie input dataframe Chen, Ting-Wen
  • Re: [R-sig-phylo] Regime class in the OUwie input dataframe O'Meara, Brian C via R-sig-phylo
• [R-sig-phylo] Online Course: Using ChatGPT for Advanced Data Analysis - livestream seminar Michael Zyphur via R-sig-phylo
• [R-sig-phylo] ONLINE COURSE – Introduction to Machine Learning using R and Rstudio (IMLR02) Oliver Hooker
• [R-sig-phylo] Using Confidence Intervals for Visual Testing - free seminars Michael Zyphur via R-sig-phylo
• [R-sig-phylo] Including measurement error in the estimation_ fitContinuous_geiger package Jovana Malikovic
  • Re: [R-sig-phylo] Including measurement error in the estimation_ fitContinuous_geiger package O'Meara, Brian C via R-sig-phylo
• [R-sig-phylo] Online course: Clustering High-Dimensional Data (October 22) mzyphur
• Re: [R-sig-phylo] Correlation matrix for phylogenetic meta-analysis Emmanuel Paradis
• [R-sig-phylo] Error in plotting lineage-through-time figure using ltt.simmap() Chen, Ting-Wen
  • Re: [R-sig-phylo] Error in plotting lineage-through-time figure using ltt.simmap() Liam J. Revell
  • Re: [R-sig-phylo] Error in plotting lineage-through-time figure using ltt.simmap() Chen, Ting-Wen
• [R-sig-phylo] Online Course: Statistics and Data Science using Tidyverse in R mzyphur
• [R-sig-phylo] ONLINE COURSE – Introduction to R using Tidyverse (TIDY01) Oliver Hooker
• [R-sig-phylo] Online Courses: ML for Computational Biology and DNA Methylation mzyphur
• [R-sig-phylo] Machine Learning for Computational Biology - livestream seminar mzyphur
• [R-sig-phylo] Analysis of DNA Methylation - livestream seminar Michael Zyphur
  • Re: [R-sig-phylo] Analysis of DNA Methylation - livestream seminar Michael Zyphur
• [R-sig-phylo] Dimension Reduction for Complex Datasets - livestream seminar Michael Zyphur
• [R-sig-phylo] Calculating Asymmetry in Speciation Across a Phylogeny Russell Engelman
  • Re: [R-sig-phylo] Calculating Asymmetry in Speciation Across a Phylogeny O'Meara, Brian C
  • Re: [R-sig-phylo] Calculating Asymmetry in Speciation Across a Phylogeny Russell Engelman
  • Re: [R-sig-phylo] Calculating Asymmetry in Speciation Across a Phylogeny Nick Matzke
  • Re: [R-sig-phylo] Calculating Asymmetry in Speciation Across a Phylogeny Leandro Aristide
• [R-sig-phylo] Friedrich Leisch passed Hilmar Lapp
• [R-sig-phylo] ONLINE COURSE – Reproducible and collaborative data analysis with R (RACR03) Oliver Hooker
• [R-sig-phylo] Predictor types for caper:pgls JAIME ADRIAN CORDOVA
  • Re: [R-sig-phylo] Predictor types for caper:pgls Julien Clavel
• [R-sig-phylo] VCV based on admixture? Jon
  • Re: [R-sig-phylo] VCV based on admixture? Cecile Ane
  • Re: [R-sig-phylo] VCV based on admixture? Alejandro Gonzalez Voyer
  • Re: [R-sig-phylo] VCV based on admixture? Cecile Ane
  • Re: [R-sig-phylo] VCV based on admixture? Cecile Ane
• [R-sig-phylo] Extracting only FASTA sequences from a FASTQ file Jarrett Phillips
  • Re: [R-sig-phylo] Extracting only FASTA sequences from a FASTQ file Emmanuel Paradis
• [R-sig-phylo] estimating BLs on a fixed topology Karla Shikev
  • Re: [R-sig-phylo] estimating BLs on a fixed topology Nathanael Walker-Hale
• [R-sig-phylo] chronos ape substitution rate strict clock Vincenzo Ellis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Emmanuel Paradis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Vincenzo Ellis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Liam J. Revell
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Vincenzo Ellis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Klaus Schliep
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Vincenzo Ellis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Emmanuel Paradis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Vincenzo Ellis
  • Re: [R-sig-phylo] chronos ape substitution rate strict clock Emmanuel Paradis
• [R-sig-phylo] Postdoc at OIST Liam J. Revell
• [R-sig-phylo] ONLINE COURSE – An Introduction to Spatial Eco-Phylogenetics and Comparative Methods (SECM01) Oliver Hooker
  • [R-sig-phylo] ONLINE COURSE – An Introduction to Spatial Eco-Phylogenetics and Comparative Methods (SECM01) Oliver Hooker
• [R-sig-phylo] Evolution 2024 Symposium on Replicability & Reproducibility Liam J. Revell
• [R-sig-phylo] TreeTools limit on number of tips roee maor
  • Re: [R-sig-phylo] TreeTools limit on number of tips Martin R. Smith
• [R-sig-phylo] An Introduction to Spatial Eco-Phylogenetics and Comparative Methods (SECM01) Oliver Hooker
• [R-sig-phylo] Comparing rates from fitContinuous in geiger Jeremiah Scott
• [R-sig-phylo] HPD in threshBayes function (phytools) Leonardo Matheus Servino
  • Re: [R-sig-phylo] HPD in threshBayes function (phytools) Liam J. Revell
  • Re: [R-sig-phylo] HPD in threshBayes function (phytools) Leonardo Matheus Servino
• [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Emmanuel Paradis
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot William Gearty
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot William Gearty
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Liam J. Revell
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
  • Re: [R-sig-phylo] Highlighting Specific Clades in a Lineage-Through-Time Plot Russell Engelman
• [R-sig-phylo] Postdoc in phylogenetic comparative methods at UMiami Liam J. Revell
• [R-sig-phylo] The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Oliver Hooker
• [R-sig-phylo] Assistant Professor position in phylogenetics at CSU Sloan,Dan
• [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap Felipe Rossetto
  • Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap Liam J. Revell
  • Re: [R-sig-phylo] command for access posterior probabilities values of pie charts obtained from make.simmap Felipe Rossetto
• [R-sig-phylo] Warning NaNs produced in hisse Leonardo Matheus Servino
• [R-sig-phylo] print circles in the tree nodes coloring by PP Pedro Taucce
  • Re: [R-sig-phylo] print circles in the tree nodes coloring by PP Liam J. Revell
  • Re: [R-sig-phylo] print circles in the tree nodes coloring by PP Pedro Taucce
• [R-sig-phylo] ONLINE COURSE – Machine Learning with R (Intermediate – Advanced) (MLIA01) Oliver Hooker
• [R-sig-phylo] Warnings after running brm Leonardo Matheus Servino
• [R-sig-phylo] Possible problem with Scaled likelihoods in ancestral state estimation Laura Schaedler
  • Re: [R-sig-phylo] Possible problem with Scaled likelihoods in ancestral state estimation Liam J. Revell
• Re: [R-sig-phylo] R-sig-phylo Digest, Vol 186, Issue 3 Oscar Johnson
• [R-sig-phylo] Correlation coefficient from a PGLS Lior Glick
  • Re: [R-sig-phylo] Correlation coefficient from a PGLS Emmanuel Paradis
• [R-sig-phylo] Ordination of discrete traits in threshBayes Stênio Ítalo Araújo Foerster
• [R-sig-phylo] kdetrees Vojtěch Zeisek
• [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file Felipe Rossetto
  • Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file Liam J. Revell
  • Re: [R-sig-phylo] time axis in fan style phylogeny: arcs did not appear in eps file Felipe Rossetto
• [R-sig-phylo] Title: Error in make.simmap() function: argument of length 0 Souza Ferreira, Rachel
• [R-sig-phylo] Including intraspecific variation (SE) in geiger::fitContinousMCMC Diogo B. Provete
  • Re: [R-sig-phylo] Including intraspecific variation (SE) in geiger::fitContinousMCMC Julien Clavel
• [R-sig-phylo] Error in phytools rateshift Lior Glick
  • Re: [R-sig-phylo] Error in phytools rateshift Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools rateshift Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools rateshift Lior Glick
  • Re: [R-sig-phylo] Error in phytools rateshift Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools rateshift Lior Glick
• [R-sig-phylo] Using results of make.simmap to color edges by most likely state Rafael S Marcondes
  • Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state Liam J. Revell
  • Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state Rafael S Marcondes
• [R-sig-phylo] Evolutionary Quantitative Genetics Workshop 2023 Joe Felsenstein
• [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Emmanuel Paradis
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Klaus Schliep
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Emmanuel Paradis
  • [R-sig-phylo] Parallelization in ape::dist.topo Martin R. Smith
  • Re: [R-sig-phylo] Parallelization in ape::dist.topo Vojtěch Zeisek
• [R-sig-phylo] Estimating the posterior prob of the ancestral states of two nodes Sishuo Wang
  • Re: [R-sig-phylo] Estimating the posterior prob of the ancestral states of two nodes Liam J. Revell
• [R-sig-phylo] Call for papers: Special Issue featuring linking micro- and macroevolution in Journal of Evolutionary Biology Masahito Tsuboi
• [R-sig-phylo] NAMESPACE issue Kevin Arbuckle
  • Re: [R-sig-phylo] NAMESPACE issue Emmanuel Paradis
  • Re: [R-sig-phylo] NAMESPACE issue Kevin Arbuckle
  • Re: [R-sig-phylo] NAMESPACE issue Liam J. Revell
• [R-sig-phylo] PhD projects: 1. wildlife trade 2. Placenta evolution Isabella Capellini
• [R-sig-phylo] Generating a matrix of interspecfic genetic distances Jarrett Phillips
  • Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances Viechtbauer, Wolfgang (NP)
  • Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances Viechtbauer, Wolfgang (NP)
  • Re: [R-sig-phylo] Generating a matrix of interspecfic genetic distances Jarrett Phillips
• [R-sig-phylo] Introduction to eco-phylogenetics and comparative analyses using R (ECPH02) Oliver Hooker
  • Re: [R-sig-phylo] Evolutionary Quantitative Genetics Workshop 2023 Joe Felsenstein
• [R-sig-phylo] Introduction to Multi’omics Data Analysis from Microbial Communities (MOMC01) Oliver Hooker
• [R-sig-phylo] Postdoc position on PCM of trait evolution in Stockholm/Sweden Masahito Tsuboi
• [R-sig-phylo] Extract and summarise internal branch lengths for different samples Jhonny Capichoni Massante
  • Re: [R-sig-phylo] Extract and summarise internal branch lengths for different samples Liam J. Revell
  • Re: [R-sig-phylo] Extract and summarise internal branch lengths for different samples Liam J. Revell
• [R-sig-phylo] phytools GitHub version Liam J. Revell
• [R-sig-phylo] Extracting interspecific distances as a matrix Jarrett Phillips
  • Re: [R-sig-phylo] Extracting interspecific distances as a matrix Eliot Miller
  • [R-sig-phylo] Fwd: Extracting interspecific distances as a matrix Eliot Miller
• [R-sig-phylo] R phylogenetics workshop at UMass-Boston Liam J. Revell
• [R-sig-phylo] Error in phytools - locate.fossil? Lindsey Dehaan
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Lindsey Dehaan
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Liam J. Revell
  • Re: [R-sig-phylo] Error in phytools - locate.fossil? Lindsey Dehaan
• [R-sig-phylo] Counting and getting the age of cherries in a tree Ivan Magalhaes
  • Re: [R-sig-phylo] Counting and getting the age of cherries in a tree Liam J. Revell
  • Re: [R-sig-phylo] Counting and getting the age of cherries in a tree Ivan Magalhaes
• [R-sig-phylo] fitContinuous in Geiger William Brown
  • Re: [R-sig-phylo] fitContinuous in Geiger Liam J. Revell
• [R-sig-phylo] Phylogenetic bubble plot Saleh Rahimlou
  • Re: [R-sig-phylo] Phylogenetic bubble plot Liam J. Revell
• [R-sig-phylo] Estimating tip rates of molecular evolution Karla Shikev
  • Re: [R-sig-phylo] Estimating tip rates of molecular evolution Jacob Berv
• Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete, trait Jonas Eberle
  • Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete, trait Klaus Schliep
• Re: [R-sig-phylo] R-sig-phylo Digest, Vol 178, Issue 5 Krzysztof Kozak
• Re: [R-sig-phylo] ancestral state reconstruction with a complex discrete trait (Krzysztof Bartoszek) Krzysztof Bartoszek

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