Dear Klaus, all trees are rooted. So I'm not sure why I am getting this warning.
Thanks! Fabricia. ________________________________ De: Klaus Schliep <[email protected]> Cc: "[email protected]" <[email protected]> Enviadas: Terça-feira, 8 de Abril de 2014 13:13 Assunto: Re: [R-sig-phylo] chronos and gammaStat Hello Frabricia, I assume your RAxML tree is not rooted. is.rooted(chr) and use the function root if chr is not rooted. Regards, Klaus On Tue, Apr 8, 2014 at 2:03 PM, Fabricia Nascimento < > Hi! > > I am using the gammaStat in ape to analyze some trees I generated using > simulations and RaxML. > > > After using the R code below to convert it to ultrametric tree: > cal <- makeChronosCalib(Tree, age.min=1) > chr <- chronos(Tree, lambda = 0.1, calibration = cal) > gammaStat(chr) > > I get the following result: > > gammaStat(chr) > [1] 2.639323 > Warning message: > In (2:N) * g : > longer object length is not a multiple of shorter object length > > Can I ignore this warning? > > Thanks very much! > Fabricia. > > [[alternative HTML version deleted]] > > > _______________________________________________ > R-sig-phylo mailing list - [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/[email protected]/ > -- Klaus Schliep [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/ [[alternative HTML version deleted]]
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