Hi there, yes, adegenet handles any (constant) ploidy for most purposes. For input formats etc. please see the tutorial on basics, section 'documents' on: http://adegenet.r-forge.r-project.org/
Please feel free to use the adegenet forum for adegenet-related questions. Cheers Thibaut ________________________________________ From: [email protected] [[email protected]] on behalf of Gilles Benjamin Leduc [[email protected]] Sent: 29 May 2014 17:12 To: Vojtěch Zeisek Cc: mailinglist R Subject: Re: [R-sig-phylo] Triploid microsatellites? Hi, Yes it is possible in R, there is a package created for related purposes: poppr or something like that… The dev version on github should be preferred. I have seen several R work with polyploids and microsatelites, unfortunately… I work with ALFP :p Benjamin Le Jeudi 29 Mai 2014 13:40 GMT, Vojtěch Zeisek <[email protected]> a écrit: > Hello, > I wonder if it is possible to handle triploid microsatellite (yes, all > individuals are regular 3n) data in adegenet and another R packages. And if > so, how to enter the data. Any experiences and/or Ideas are very welcomed. :-) > Structure and BAPS are working well. > Yours sincerely, > Vojtěch Zeisek > > -- > Vojtěch Zeisek > http://trapa.cz/en/ > > Department of Botany, Faculty of Science > Charles University in Prague > Benátská 2, Prague, 12801, CZ > http://botany.natur.cuni.cz/en/ > > Institute of Botany, Academy of Science > Zámek 1, Průhonice, 25243, CZ > http://www.ibot.cas.cz/en/ > > Czech Republic _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/ _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/
