Hello, thank You, I overlooked that function. Yes, that is what I'm looking for. Sincerely, Vojtěch
Dne Po 3. listopadu 2014 10:23:32 jste napsal(a): > Hello Vojtěch, > > have you looked into consensusNet in phangorn? > > Regards, > Klaus > > Am 03.11.2014 03:10 schrieb "Vojtěch Zeisek" <vo...@trapa.cz>: > > Hello, > > let's say I have many gene trees (all have same labels) in one multiPhylo > > object. The trees are not fully congruent. One of the reasons can be > > hybridizations among taxa. I wonder if I can make from those trees a > > network > > looking, for example, like those from SplitsTree. I looked at functions in > > ape > > and phangorn, but they seem to work on only one phylogenetic tree or on > > distance matrix. I want to get a species tree, but with (possible) > > reticulations. Can I do this? > > Sincerely, > > Vojtěch -- Vojtěch Zeisek http://trapa.cz/en/ Department of Botany, Faculty of Science Charles University in Prague Benátská 2, Prague, 12801, CZ http://botany.natur.cuni.cz/en/ Institute of Botany, Academy of Science Zámek 1, Průhonice, 25243, CZ http://www.ibot.cas.cz/en/ Czech Republic
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