Hi Fabricia,

nobody will be able to answer you if you don't provide the data and/or code
you are using. See for example
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example/5963610#5963610
If you send me the tree, I can try to figure out what is going wrong.

Klaus


On Fri, Nov 21, 2014 at 3:17 PM, Fabricia Nascimento <
[email protected]> wrote:

> Hi!
>
> I am using the function midpoint of package phangorn to root my trees
> (which I generated by simulations).
> A negative branch length is added to my tree after I use the midpoint
> function. The same does not happen if I use FigTree for example.
> Does anyone know why that happens?
>
> I cannot have a negative branch length on my trees.
>
> Thanks!
> Fabricia.
>
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-- 
Klaus Schliep
Postdoctoral Fellow
Revell Lab, University of Massachusetts Boston

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