Hi Diego, Try using 'convertTreeData' with your tree (with named nodes) and your data. See below an example:
convertTreeData(tree,data)->newtreedata fwd<-surfaceForward(newtreedata[[1]],newtreedata[[2]]) I hope it helps, good luck! a ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Dr. Arley Camargo Profesor Adjunto, Programa de Desarrollo Universitario Centro Universitario de Rivera, Universidad de la República Ituzaingó 667, Rivera 40000 Uruguay Tel: (++598) 462-26313 int. 275 Sitio web: www.cur.edu.uy Enlaces:CV-Uy <http://buscadores.anii.org.uy/buscador_cvuy/exportador/ExportarPdf?hash=466cd2a9d5ed5e2408b6372de7acd0be> ResearchGate <https://www.researchgate.net/profile/Arley_Camargo/?ev=hdr_xprf> Google scholar <http://scholar.google.com.uy/citations?user=BbPdK7wAAAAJ&hl=en> Publons <http://publons.com/a/450169/> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2015-07-18 8:52 GMT-03:00 Diego Salazar <[email protected]>: > Hi all, > > I am trying to use runSurface {surface} but I get the next error: > > > runSurface(tree, data) > Error in runSurface(tree.nex, data) : > Each node in 'tree' must have a unique label for back-compatibility > between formats. Use 'nameNodes(tree)'. > > > When I use nameNodes(tree): > > Phylogenetic tree with 113 tips and 112 internal nodes. > > Tip labels: > Pinus_clausa, Pinus_banksiana, Pinus_contorta, Pinus_virginiana, > Pinus_sabiniana, Pinus_coulteri, ... > Node labels: > zzz1, zzz2, zzz3, zzz4, zzz5, zzz6, ... > > Rooted; includes branch lengths. > > I understand that nodes haves differents labels, then what is the problem? > > Thanks in advanced > > Diego > > -- > Diego Francisco Salazar Tortosa > Phd. student > Departamento de Ecología > Facultad de Ciencias > Universidad de Granada > Av. Fuente Nueva s/n > 18071 Granada > Telefono: +34 958241000 ext 20007 > Movil: +34 634851132 > email:[email protected] > [email protected] > > _______________________________________________ > R-sig-phylo mailing list - [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/[email protected]/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/
