Hi Julie.
This is not cophyloplot - but a different function that does something
similar - however, I have now added the option of plotting scale bars to
the function plot.cophylo in the phytools package. More details on how
to use this are on my blog here:
http://blog.phytools.org/2015/10/scale-bar-for-cophylo-plotting.html.
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: [email protected]
blog: http://blog.phytools.org
On 10/6/2015 10:40 AM, Julie Lee-Yaw wrote:
Dear all,
To compare two ML phylogenies build for the same taxa using different genes,
I'm following the second suggestion from this previous post regarding rescaling
branch lengths so that I can incorporate differences in branch lengths between
the two trees:
[R-sig-phylo] Modification of figures produced using cophyloplot
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| [R-sig-phylo] Modification of figures produced using cophyloplot[R-sig-phylo]
Modification of figures produced using cophyloplot David Hembry hembry at
ecology.kyoto-u.ac.jp Thu Dec 6 02:11:52 CET 2012 |
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| View on stat.ethz.ch | Preview by Yahoo |
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My plot is looking good, but I'm wondering if there is a way to add two scale
bars (one for each of the trees being compared) to the figure? (Or maybe I've
misinterpreted how cophyloplot is doing things and the branches can now be
compared by a single scale? Either way, I don't see a way to add the scale).
Many thanks.
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