If I have a nexus file with multiple trees, and the same tips in each tree, but
some trees with polytomies, like this
#NEXUS
BEGIN TREES;
TRANSLATE
1 1,
2 2,
3 3,
4 4;
TREE A = (((1,2)5,3)6,4);
TREE B = ((1,2,3)6,4);
END;
Then when I try to resolve both trees using multi2di, I get
> n <- read.nexus("tmp.nex")
> multi2di(n)
Error in .reorder_ape(x, order, index.only, length(x$tip.label), io) :
tree apparently badly conformed
What am I doing wrong?
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