Hi, this looks like really great tool. The chapter about median trees at https:// thibautjombart.github.io/treespace/ is something different from what I need. But I will definitely use it, for little different task. :-) Thank You, V.
Dne úterý 25. dubna 2017 19:59:34 CEST jste napsal(a): > Hi there, > > treespace would be an alternative, but its usefulness for 5 trees will > be quite limited. Just in case: > https://github.com/thibautjombart/treescape > > Cheers > Thibaut > > On 25 April 2017 at 18:20, Vojtěch Zeisek <vo...@trapa.cz> wrote: > > Hello, > > for comparison of two trees I can use very nice function cophyloplot > > plotting two trees (left and right) and connecting respective nodes by > > lines. Very nice and convenient to read. But only for two trees. > > Displaying multiple trees in multiple comparisons is not very convenient. > > To display dozens to hundreds of trees there is densitree. Also nice, but > > for this purpose I don't like its display. > > I have several trees (~5) and I wish to compare their topologies, show > > supports (at least for differing nodes) and highlight differences. I > > thought about some overlay/parallel plotting (similar to the attached > > image) where there would be complete topologies displayed and > > incongruences would be easily visible. It would be probably doable by > > plotting all separate trees by plot.phylo and then combining and tuning > > the figure in some vector editor (like Inkscape). But I hope there is > > some more automated way to do it. :-) Sincerely, > > V. -- Vojtěch Zeisek https://trapa.cz/en/ Department of Botany, Faculty of Science Charles University, Prague, Czech Republic https://www.natur.cuni.cz/biology/botany/ Institute of Botany, Czech Academy of Sciences Průhonice, Czech Republic http://www.ibot.cas.cz/en/
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