Do you want to select the trees that are most incongruent with some sort of
average of the tree distribution? The `treespace`and `phytools` packages
have functions that compute average trees with different metrics, and they
also allow you to measure the distance between each tree and the average
2017-07-25 22:16 GMT+02:00 Jesse Delia <jdeli...@gmail.com>:
> Dear list,
> Does anyone know of a function or script that could select a set of the
> most incongruent trees from a list of trees? Maybe I missed a post, but
> haven't found anything.
> I running mixed models, which take a lot of computational space on my lap
> top. In effort to account for phylogenetic uncertainty, without having to
> run 100s of chains, I figured maybe i could run models across a (much)
> shorter list that accounts for more diversity in tree shape observed within
> the posterior distribution. Not sure if this makes sense, and/or is
> extremely complicated?
> Thanks for you time!
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