Hi Jesse, Do you want to select the trees that are most incongruent with some sort of average of the tree distribution? The `treespace`and `phytools` packages have functions that compute average trees with different metrics, and they also allow you to measure the distance between each tree and the average tree.
Cheers, Eduardo 2017-07-25 22:16 GMT+02:00 Jesse Delia <[email protected]>: > Dear list, > > Does anyone know of a function or script that could select a set of the > most incongruent trees from a list of trees? Maybe I missed a post, but > haven't found anything. > > I running mixed models, which take a lot of computational space on my lap > top. In effort to account for phylogenetic uncertainty, without having to > run 100s of chains, I figured maybe i could run models across a (much) > shorter list that accounts for more diversity in tree shape observed within > the posterior distribution. Not sure if this makes sense, and/or is > extremely complicated? > > Thanks for you time! > > Jesse > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list - [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r- > [email protected]/ > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/
