I do not yet see it yet (I still get the same response in R when following
those commands). I also don’t see anything in NEWS on the front page since
2017-05-03 so maybe I’m having a bigger problem, but I will check again later
today to see if it changes.
All of the best,
> On Oct 17, 2017, at 2:47 PM, Emmanuel Paradis <emmanuel.para...@ird.fr> wrote:
> Hi Elizabeth,
> I have submitted ape 5.0 on CRAN on 5 October but I'm still waiting for
> feedback. I suspect there are problems with reverse dependencies. In the
> meantime, I cleared the testing repositories thinking that CRAN would take
> the usual 1-2 days to publish the new version. Sorry for the confusion.
> I have just uploaded a version 4.9 on the testing repos which is virtually
> identical to the version being examined by CRAN. I'll upload a Windows build
> in a few hours. The NEWS file on ape-package.ird.fr has been updated.
> Le 17/10/2017 à 12:11, Elizabeth Purdom a écrit :
>> I currently have version 4.1 of ape installed on my computer (Mac OS X, R
>> 3.4.2) which appears to currently be the most up-to-date on CRAN. However, I
>> am trying to get the testing version of ape, because I know that there have
>> been changes made that I would like to take advantage of without waiting for
>> them to show up on CRAN. I have tried using the commands on the website, and
>> they do not show any new versions available. Specifically, using
>> `old.packages`, nothing is returned:
>>> old.packages(repos = "http://ape-package.ird.fr/")
>> And trying to download anyway gets me an error:
>>> download.packages("ape", ".", repos = "http://ape-package.ird.fr/")
>> trying URL 'http://ape-package.ird.fr/src/contrib/ape_0.0.1.tar.gz'
>> Error in download.file(url, destfile, method, mode = "wb", ...) :
>> cannot open URL 'http://ape-package.ird.fr/src/contrib/ape_0.0.1.tar.gz'
>> In addition: Warning message:
>> In download.file(url, destfile, method, mode = "wb", ...) :
>> cannot open URL 'http://ape-package.ird.fr/src/contrib/ape_0.0.1.tar.gz':
>> HTTP status was '404 Not Found'
>> Warning in download.packages("ape", ".", repos =
>> "http://ape-package.ird.fr/") :
>> download of package ‘ape’ failed
>> [,1] [,2]
>> This is presumably because http://ape-package.ird.fr/src/contrib/PACKAGES
>> points to 0.0.1. I don’t immediately see an option to specify a version of
>> the package (and indeed I don’t know what version I would put in). Do I need
>> to be running a development version of R to get the newest versions of ape?
>> Thanks for any help,
>> Elizabeth Purdom
>> PS Here is my sessionInfo:
>> R version 3.4.2 (2017-09-28)
>> Platform: x86_64-apple-darwin15.6.0 (64-bit)
>> Running under: OS X El Capitan 10.11.6
>> Matrix products: default
>>  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>> attached base packages:
>>  stats graphics grDevices utils datasets methods base
>> other attached packages:
>>  BiocInstaller_1.26.1
>> loaded via a namespace (and not attached):
>>  compiler_3.4.2 tools_3.4.2
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