Thanks Emmanuel! I do not yet see it yet (I still get the same response in R when following those commands). I also don’t see anything in NEWS on the front page since 2017-05-03 so maybe I’m having a bigger problem, but I will check again later today to see if it changes.
All of the best, Elizabeth > On Oct 17, 2017, at 2:47 PM, Emmanuel Paradis <emmanuel.para...@ird.fr> wrote: > > Hi Elizabeth, > > I have submitted ape 5.0 on CRAN on 5 October but I'm still waiting for > feedback. I suspect there are problems with reverse dependencies. In the > meantime, I cleared the testing repositories thinking that CRAN would take > the usual 1-2 days to publish the new version. Sorry for the confusion. > > I have just uploaded a version 4.9 on the testing repos which is virtually > identical to the version being examined by CRAN. I'll upload a Windows build > in a few hours. The NEWS file on ape-package.ird.fr has been updated. > > Best, > > Emmanuel > > Le 17/10/2017 à 12:11, Elizabeth Purdom a écrit : >> Hello, >> I currently have version 4.1 of ape installed on my computer (Mac OS X, R >> 3.4.2) which appears to currently be the most up-to-date on CRAN. However, I >> am trying to get the testing version of ape, because I know that there have >> been changes made that I would like to take advantage of without waiting for >> them to show up on CRAN. I have tried using the commands on the website, and >> they do not show any new versions available. Specifically, using >> `old.packages`, nothing is returned: >>> old.packages(repos = "http://ape-package.ird.fr/") >> NULL >> And trying to download anyway gets me an error: >>> download.packages("ape", ".", repos = "http://ape-package.ird.fr/") >> trying URL 'http://ape-package.ird.fr/src/contrib/ape_0.0.1.tar.gz' >> Error in download.file(url, destfile, method, mode = "wb", ...) : >> cannot open URL 'http://ape-package.ird.fr/src/contrib/ape_0.0.1.tar.gz' >> In addition: Warning message: >> In download.file(url, destfile, method, mode = "wb", ...) : >> cannot open URL 'http://ape-package.ird.fr/src/contrib/ape_0.0.1.tar.gz': >> HTTP status was '404 Not Found' >> Warning in download.packages("ape", ".", repos = >> "http://ape-package.ird.fr/") : >> download of package ‘ape’ failed >> [,1] [,2] >> This is presumably because http://ape-package.ird.fr/src/contrib/PACKAGES >> points to 0.0.1. I don’t immediately see an option to specify a version of >> the package (and indeed I don’t know what version I would put in). Do I need >> to be running a development version of R to get the newest versions of ape? >> Thanks for any help, >> Elizabeth Purdom >> PS Here is my sessionInfo: >>> sessionInfo() >> R version 3.4.2 (2017-09-28) >> Platform: x86_64-apple-darwin15.6.0 (64-bit) >> Running under: OS X El Capitan 10.11.6 >> Matrix products: default >> BLAS: >> /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib >> LAPACK: >> /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib >> locale: >>  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >> attached base packages: >>  stats graphics grDevices utils datasets methods base >> other attached packages: >>  BiocInstaller_1.26.1 >> loaded via a namespace (and not attached): >>  compiler_3.4.2 tools_3.4.2 >> _______________________________________________ >> R-sig-phylo mailing list - Rfirstname.lastname@example.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at http://email@example.com/ _______________________________________________ R-sig-phylo mailing list - Rfirstname.lastname@example.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://email@example.com/