Hello Rafael.
Have you tried adjusting the argument 'scale' which sets the factor by
which x will be rescaled so that the tree & data can be plotted in the
same space?
Also, if you are just plotting a right-facing phylogram I recommend
plotTree.barplot (also within phytools) which is in some ways more
flexible & robust.
Failing any of these options you are welcome to send me your saved
workspace so I can investigate (& if there is a bug in phytools - fix it).
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org
On 11/10/2017 4:55 PM, Rafael S Marcondes wrote:
Hi all,
I'm encountering a little bump trying to use this really cool plot function
in phytools and I can't figure out what's wrong:
plotTree.wBars(tree=tr, x=dat)
Error in plot.window(xlim = xlim, ylim = ylim, asp = asp) :
need finite 'xlim' values
Including an xlim argument doesn't work:
plotTree.wBars(tree=tr, x=dat, xlim=c(0,100), ylim=c(0,100))
Error in plot.window(xlim = xlim, ylim = ylim, asp = asp) :
need finite 'xlim' values
Thanks for any help!
*--*
*Rafael Sobral Marcondes*
PhD Candidate (Systematics, Ecology and Evolution/Ornithology)
Museum of Natural Science <http://sites01.lsu.edu/wp/mns/>
Louisiana State University
119 Foster Hall
Baton Rouge, LA 70803, USA
Twitter: @rafmarcondes <https://twitter.com/rafmarcondes>
[[alternative HTML version deleted]]
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
