Hello Rafael.

Have you tried adjusting the argument 'scale' which sets the factor by which x will be rescaled so that the tree & data can be plotted in the same space?


Also, if you are just plotting a right-facing phylogram I recommend plotTree.barplot (also within phytools) which is in some ways more flexible & robust.

Failing any of these options you are welcome to send me your saved workspace so I can investigate (& if there is a bug in phytools - fix it).

All the best, Liam

Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org

On 11/10/2017 4:55 PM, Rafael S Marcondes wrote:
Hi all,

I'm encountering a little bump trying to use this really cool plot function
in phytools and I can't figure out what's wrong:

plotTree.wBars(tree=tr, x=dat)
Error in plot.window(xlim = xlim, ylim = ylim, asp = asp) :
need finite 'xlim' values

Including an xlim argument doesn't work:

plotTree.wBars(tree=tr, x=dat, xlim=c(0,100), ylim=c(0,100))
Error in plot.window(xlim = xlim, ylim = ylim, asp = asp) :
need finite 'xlim' values

Thanks for any help!


*--*
*Rafael Sobral Marcondes*
PhD Candidate (Systematics, Ecology and Evolution/Ornithology)

Museum of Natural Science <http://sites01.lsu.edu/wp/mns/>
Louisiana State University
119 Foster Hall
Baton Rouge, LA 70803, USA

Twitter: @rafmarcondes <https://twitter.com/rafmarcondes>

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