Hey, Just for the record. I just found two alternatives that seem to be in active development, nexml (www.nexml.org) and RecPhyloXML ( http://phylariane.univ-lyon1.fr/recphyloxml/). nexml is supported by rOpenSci (https://github.com/ropensci/RNeXML), and both have C++/phython APIs that can be useful for R package development.

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I still may try to get something done on PhyloXML since jsPhyloSVG, which I'm working on now https://uscbiostats.github.io/jsPhyloSVG/, only supports annotations in PhyloXML (it does support nexml trees, but I don't think it support annotations). Best, George G. Vega Yon +1 (626) 381 8171 <(626)%20381-8171> http://ggvy.cl On Wed, Dec 13, 2017 at 11:35 AM, George Vega Yon <g.vega...@gmail.com> wrote: > That's a good suggestion. I'll reach out the rOpenSci people/ > > Still, I'm starting a repo here: https://github.com/USCBiostats/rphyloxml > will start dropping stuff there. > > Best, > > George G. Vega Yon > +1 (626) 381 8171 <(626)%20381-8171> > http://ggvy.cl > > On Tue, Dec 12, 2017 at 4:31 PM, Daniel Fulop <dfulop....@gmail.com> > wrote: > >> Sounds like a good idea. Not sure if youâ€™re reinventing the wheel or not. >> Sounds like something ROpenSci might support; see: >> https://github.com/ropensci/onboarding >> >> >> >> >> From: George Vega Yon <g.vega...@gmail.com> <g.vega...@gmail.com> >> Reply: George Vega Yon <g.vega...@gmail.com> <g.vega...@gmail.com> >> Date: December 12, 2017 at 4:13:59 PM >> To: Group R-sig-phylo <r-sig-phylo@r-project.org> >> <r-sig-phylo@r-project.org> >> Subject: [R-sig-phylo] Will phyloXML in R be useful? >> >> Hey, >> >> Right now, I'm working on a wrapper for jsPhyloSVG (a javascript library >> for visualizing phylogenetic trees on the web browser) in R, and just got >> to learn about the phyloXML format. Googling around and checking out this >> email list archives it seems that there's no support for this format in >> R. >> >> My question is: how useful do you think having this in R will be? I'm >> willing to write an R package to read/write trees in this format (done >> before with GEXF, which is for networks in general). But I just want to >> make sure that (1) this will be useful for the community, and (2) I'm not >> reinventing the wheel (is anybody working on this now?). What are your >> thoughts? >> >> Best, >> >> George G. Vega Yon >> +1 (626) 381 8171 <(626)%20381-8171> >> http://ggvy.cl >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> R-sig-phylo mailing list - R-sig-phylo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at http://www.mail-archive.com/r- >> sig-ph...@r-project.org/ >> >> > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/