Dear developer team, Thank you for providing an excellent package. But I have encountered a small problem with as.igraph.phylo().
Error in graph.edgelist(x$edge, directed = directed, ...) : could not find function "graph.edgelist" Calls: as.igraph.phylo The workaround for a user is to do `library(igraph)` explicitly because it exports `graph.edgelist()`. But I think the ape package should call this function with explicit namespace like `igraph::graph.edgelist()`. Also it would be better to add igraph to Suggests section in DESCRIPTION so that `utils::globalVariables("graph.edgelist")` can be removed. Also note that `graph.edgelist()` is deprecated (it still works, though) and replaced by `graph_from_edgelist()` in the current version of igraph. In summary, I suggest the following modification: - replace line 143 in as.phylo.R with `igraph::graph_from_edgelist(x$edge, directed = directed)` - remove line 131 in as.phylo.R: `utils::globalVariables("graph.edgelist")` - add igraph to Suggests in DESCRIPTION Best regards, Watal -- Watal M. Iwasaki / 岩嵜 航 SOKENDAI, The Graduate University for Advanced Studies, Hayama, Kanagawa 240-0193, Japan +81-46-858-1576 https://heavywatal.github.io/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/