Dear Nick.

When you encounter a bug or issue in ape have you tried emailing Emmanuel (emmanuel.para...@ird.fr) or this list? Usually he is pretty responsive.

All the best, Liam

Liam J. Revell
University of Massachusetts Boston
Universidad Católica de la Ssma Concepción

Web & phytools:
http://faculty.umb.edu/liam.revell/, http://www.phytools.org, http://blog.phytools.org

Academic Director UMass Boston Chile Abroad:
https://www.umb.edu/academics/caps/international/biology_chile

Excess mortality & COVID-19 explorer web application:
https://liamrevell.github.io/excess-mortality-explorer.html

On 12/3/2020 9:44 AM, Nick Youngblut wrote:
EXTERNAL SENDER

Hello!

I keep running into bugs with the ape R package, and I usually just work around the issues (eg., using 
another phylogeny R package) because I don’t know of a good way of submitting bug reports to the package 
developer(s). While 
https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Fape-package.ird.fr%2F&data=04%7C01%7Cliam.revell%40umb.edu%7Ccd7c756b843a4c61842f08d8979a0f0c%7Cb97188711ee94425953c1ace1373eb38%7C0%7C1%7C637426035237836148%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=q98folhy9dOyyQEvdAFwO8ZWsrcq56cgfF1DPAzSpJM%3D&reserved=0
 
<https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Fape-package.ird.fr%2F&amp;data=04%7C01%7Cliam.revell%40umb.edu%7Ccd7c756b843a4c61842f08d8979a0f0c%7Cb97188711ee94425953c1ace1373eb38%7C0%7C1%7C637426035237836148%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&amp;sdata=q98folhy9dOyyQEvdAFwO8ZWsrcq56cgfF1DPAzSpJM%3D&amp;reserved=0>
 is useful, it doesn’t allow users to provide feedback about ape (or the other R packages listed). It would 
be great to have the ape package source code on GitHub, and that will probably make future development of the 
source code easier (eg., allowing PRs from other developers).

Best,
Nick
         [[alternative HTML version deleted]]

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