is it eukaryote oriented or can be also applied to prokaryotes? El vie, 30 jul 2021 a las 1:39, Oliver Hooker (< oliverhoo...@prstatistics.com>) escribió:
> ONLINE COURSE -Introduction to eco-phylogenetics and comparative analyses > using R (ECPH01) This course will be delivered live > > > https://www.prstatistics.com/course/introduction-to-eco-phylogenetics-and-comparative-analyses-using-r-ecph01/ > > 22 September 2021 - 28 September 2021 > > TIME ZONE – UK local time (GMT+0) – however all sessions will be recorded > and made available allowing attendees from different time > zones to follow a day behind with an additional 1/2 days support after the > official course finish date (please email > oliverhoo...@prstatistics.com for full details or to discuss how we can > accommodate you). > > Course Overview: > > In this five day course, we provide an introduction to eco-phylogenetics > and comparative analyses using R. We begin by providing an overview on the > use of phylogenies as a tool for evolutionary biologists and modern > techniques to deal with large phylogenies and to incorporate phylogenetic > uncertainty in the analyses (day 1). We then cover some of the most > relevant eco-phylogenetic analyses and provide examples from the community > to themacro-ecological scale (day 2-3). Finally, we introduce a diversity > of classic and modern phylogenetic comparative methods to consider the > historical relationship of lineages in eco-evolutionary research, including > models of trait evolution, analysis of clade diversification and the use of > phylogenies in spatial distribution models among others (day 4-5). > > Instructors > > Dr. Rafael Molina Venegas > Dr. Ignacio Morales Castilla > > Course Programme > > Wednesday 22nd – Classes from 08:00 to 16:30• Introduction and a brief > phylogenetic primer. Basic terminology for non- phylogeneticists, > phylogenetic inference (quick overview), phylogenies aevolutionary > hypotheses.• Working with phylogenies. Newick format and structure of the R > phylo object. Elementary operations on phylogenies (pruning, resolving > polytomies, sticking species). Visualizing large phylogenies.• Building > purpose-specific mega-trees from extant trees and incorporating > phylogenetic uncertainty. Software phylocom, V.PhyloMaker, SUNPLIN and > randtip R package. > > Thursday 23rd – Classes from 08:00 to 16:30• Introduction to the > eco-phylogenetic framework, classical conception and posterior > modifications.• Phylogenetic alpha diversity (how much? how different? how > regular?). Community data matrices, null models, applications to > biodiversity conservation.• Phylogenetic beta diversity. The turnover and > nestedness component of beta diversity. > > Friday 24th – Classes from 08:00 to 16:30• Incorporating the exact > branching pattern of phylogenies into eco-phylogenetic analyses.• Spatial > phylogenetics. RPD, RPE and CANEPE analysis.• Overview of functional trait > ecology. Functional richness, evenness and divergence.Community weighted > means.• Phylogenetic imputation of trait datasets. Bounding prediction > uncertainty using evolutionary models. Phylogenies as a null model in > ecology. > > Monday 27th from 08:00 to 16:30 The phylogenetic comparative method, from > independent contrasts to sophisticated modelling. Analyses of phylogenetic > signal and models of evolution: rationale, common- practice, and new > trends. Correlated evolution and ancestral trait reconstruction. Analyses > of diversification, speciation and extinction rates in a geographic > context. > > Tuesday 28th – Classes from 08:00 to 16:30 The need to account for > phylogenetic relationships in models. Most common phylogenetic modelling > approaches: PGLS, PGLMM, BayesianPMM. Putting phylogenies in the > geography: how to combine phylogenies with species distribution models. > > UPCOMING COURSES > > Missing Data Analytics (MDAR01) > www.prstatistics.com/course/online-course-missing-data-analytics-mdar01 > 8 September 2021 - 10 September 2021 > > Functional ecology from organism to ecosystem: theory and computation > (FEER02) > > www.prstatistics.com/course/functional-ecology-from-organism-to-ecosystem-theory-and-computation-feer02/ > 13 September 2021 - 17 September 2021 > > Meta-analysis in ecology, evolution and environmental sciences (METR02) > > www.prstatistics.com/course/meta-analysis-in-ecology-evolution-and-environmental-sciences-metr02/ > 13 September 2021 - 17 September 2021 > > Species Distribution Modeling using R (SDMR04) > www.prstatistics.com/course/species-distribution-modeling-using-r-sdmr04/ > 21 September 2021 - 30 September 2021 > > Phylogenetic comparative methods (PGCM01) > > https://www.prstatistics.com/course/phylogenetic-comparative-methods-pgcm01/ > 22 September 2021 - 28 September 2021 > > Multivariate analysis of ecological communities in R with the VEGAN package > (VGNR03) > > www.prstatistics.com/course/multivariate-analysis-of-ecological-communities-in-r-with-the-vegan-package-vgnr03/ > 4 October 2021 - 8 October > > Introduction to Data Wrangling and Data Visualization using R (DWDV01) > > www.prstatistics.com/course/introduction-to-data-wrangling-and-data-visualization-using-r-dwdv01/ > 4 October 2021 - 8 October 2021 > > Introduction to Bayesian modelling with INLA (BMIN02) > > https://www.prstatistics.com/course/introduction-to-bayesian-modelling-with-inla-bmin02/ > 4 October 2021 - 8 October 2021 > > Landscape genetic data analysis using R (LNDG05) > > https://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg05/ > 18 October 2021 - 27 October 2021 > > Species distribution modelling with Bayesian statistics in R (SDMB03) > > www.prstatistics.com/course/species-distribution-modelling-with-bayesian-statistics-in-r-sdmb03/ > 6 December 2021 - 10 December 2021 > > Time Series Data Analysis (TSDA01) > https://www.prstatistics.com/course/time-series-data-analysis-tsda01/ > 14 December 2021 - 17 December 2021 > > Bayesian Data Analysis (BADA01) > https://www.prstatistics.com/course/bayesian-data-analysis-bada01/ > 10th > <https://www.prstatistics.com/course/bayesian-data-analysis-bada01/10th> > January 2022 - 14th January 2022 > > Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM08) > > https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm08/ > 1st > <https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm08/1st> > February 2022 - 4th February 2022 > > -- > Oliver Hooker PhD. > PR statistics > > Missing Data Analytics (MDAR01) > www.prstatistics.com/course/online-course-missing-data-analytics-mdar01 > 8 September 2021 - 10 September 2021 > > Functional ecology from organism to ecosystem: theory and computation > (FEER02) > > www.prstatistics.com/course/functional-ecology-from-organism-to-ecosystem-theory-and-computation-feer02/ > 13 September 2021 - 17 September 2021 > > Meta-analysis in ecology, evolution and environmental sciences (METR02) > > www.prstatistics.com/course/meta-analysis-in-ecology-evolution-and-environmental-sciences-metr02/ > 13 September 2021 - 17 September 2021 > > Species Distribution Modeling using R (SDMR04) > www.prstatistics.com/course/species-distribution-modeling-using-r-sdmr04/ > 21 September 2021 - 30 September 2021 > > Phylogenetic comparative methods (PGCM01) > > https://www.prstatistics.com/course/phylogenetic-comparative-methods-pgcm01/ > 22 September 2021 - 28 September 2021 > > Multivariate analysis of ecological communities in R with the VEGAN package > (VGNR03) > > www.prstatistics.com/course/multivariate-analysis-of-ecological-communities-in-r-with-the-vegan-package-vgnr03/ > 4 October 2021 - 8 October > > Introduction to Data Wrangling and Data Visualization using R (DWDV01) > > www.prstatistics.com/course/introduction-to-data-wrangling-and-data-visualization-using-r-dwdv01/ > 4 October 2021 - 8 October 2021 > > Introduction to Bayesian modelling with INLA (BMIN02) > > https://www.prstatistics.com/course/introduction-to-bayesian-modelling-with-inla-bmin02/ > 4 October 2021 - 8 October 2021 > > Landscape genetic data analysis using R (LNDG05) > > https://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg05/ > 18 October 2021 - 27 October 2021 > > Species distribution modelling with Bayesian statistics in R (SDMB03) > > www.prstatistics.com/course/species-distribution-modelling-with-bayesian-statistics-in-r-sdmb03/ > 6 December 2021 - 10 December 2021 > > Time Series Data Analysis (TSDA01) > https://www.prstatistics.com/course/time-series-data-analysis-tsda01/ > 14 December 2021 - 17 December 2021 > > Bayesian Data Analysis (BADA01) > https://www.prstatistics.com/course/bayesian-data-analysis-bada01/ > 10th > <https://www.prstatistics.com/course/bayesian-data-analysis-bada01/10th> > January 2022 - 14th January 2022 > > Stable Isotope Mixing Models using SIBER, SIAR, MixSIAR (SIMM08) > > https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm08/ > 1st > <https://www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm08/1st> > February 2022 - 4th February 2022 > > www.PRstatistics.com > > 53 Morrison Street > Glasgow > G5 8LB > +44 (0) 7966500340 > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > -- Salvador Espada Hinojosa Monika Bright's Lab Department of Functional and Evolutionary Ecology University of Vienna Althanstraße, 14 1090 Vienna (Austria) Mobile: (+43) 660 5952724 skype: salva_e http://salvae.net <http://about.me/salvae> [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
