Dear colleagues,

I am happy to announce the 6th edition of the Transmitting Science 
course "Manipulation of NGS Data for Genomic and Population Genetics 
Analyses", this course will be run online.

Schedule: Online live sessions on May 5th, 7th, 9th, 12th and 14th, 
2025; 13:00 to 17:00 (Madrid time zone).

This course offers a comprehensive introduction to Next-Generation 
Sequencing (NGS) data analysis, guiding participants through second and 
third-sequencing technologies, command-line operations, and data 
management. Key topics include quality assessment, variant detection, 
and large-scale genomic analyses.

Participants will gain hands-on experience with computational pipelines 
and explore analytical approaches to address diverse biological research 
questions.

Course webpage: 
https://www.transmittingscience.com/courses/genetics-and-genomics/manipulation-ngs-data-genomic-population-genetics-analyses/

Course programme:

        * Introduction to NGS sequencing platforms.
        * Introduction to basic command lines.
        * Basic raw data manipulations (counting sequences, listing files).
        * Raw data QC & Cleaning.
        * Mapping: principle, tools, execution, cleaning, data control,…
        * SNP calling: raw calling, cleaning calling, filtering.
        * VCF manipulations: filtering on MAF, heterozygosity…
        * Impact of SNPs on genes.
        * Population genomics using sNMF.
        * Assembling genomes with long reads
        * Comparing assembled genomes and SV detection
        * Testing tools and different conditions to answer different 
biological questions.
        * Discussion about bioinformatic strategies related with sientific 
projects of participants.

Do not hesitate to contact us at cour...@transmittingscience.com if you 
have any doubts or questions.

Best wishes

Sole

-- 
Soledad De Esteban-Trivigno, PhD
Director
Transmitting Science
www.transmittingscience.com/courses

X @SoleDeEsteban
Orcid: https://orcid.org/0000-0002-2049-0890

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