r-sig-phylo  

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• [R-sig-phylo] Phylogenetic regression with a trait homologous within lower taxonomic groups, but analogous between higher taxonomic levels David Labonte
  • Re: [R-sig-phylo] Phylogenetic regression with a trait homologous within lower taxonomic groups, but analogous between higher taxonomic levels Daniel Fulop
• [R-sig-phylo] Ancestral State Reconstruction Using Internal Node Data Jackson, Laura Marie
• [R-sig-phylo] Constraining node values in an OUCH analysis Nathan Thompson
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Aaron King
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis David Bapst
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Aaron King
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Daniel Fulop
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Slater, Graham
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Daniel Fulop
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Slater, Graham
  • Re: [R-sig-phylo] Constraining node values in an OUCH analysis Julien Clavel
• [R-sig-phylo] Problem with traitDependentBAMM function Diego Salazar
  • Re: [R-sig-phylo] Problem with traitDependentBAMM function Huateng Huang
• [R-sig-phylo] Phylogenetic PCA Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Phylogenetic PCA Vojtěch Zeisek
  • Re: [R-sig-phylo] Phylogenetic PCA Thomas Püschel
  • Re: [R-sig-phylo] Phylogenetic PCA Sergio Ferreira Cardoso
• [R-sig-phylo] Converting species cladogram to dendrogram for heatmap with R Anand K S Rao
  • Re: [R-sig-phylo] Converting species cladogram to dendrogram for heatmap with R Liam J. Revell
  • Re: [R-sig-phylo] Converting species cladogram to dendrogram for heatmap with R Anand K S Rao
  • Re: [R-sig-phylo] Converting species cladogram to dendrogram for heatmap with R Emmanuel Paradis
  • Re: [R-sig-phylo] Converting species cladogram to dendrogram for heatmap with R Anand K S Rao
• [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Diederik Strubbe
  • Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Jörg Albrecht
  • Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Diederik Strubbe
  • Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Jarrod Hadfield
  • Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Daniel Fulop
  • Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Peter Smits
  • Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Diederik Strubbe
• [R-sig-phylo] question about P-value AMOVA Antonio Cabrera
• [R-sig-phylo] clade-specific release and radiate model? Daniel Fulop
  • Re: [R-sig-phylo] clade-specific release and radiate model? Brian O'Meara
  • Re: [R-sig-phylo] clade-specific release and radiate model? Daniel Fulop
  • Re: [R-sig-phylo] clade-specific release and radiate model? Julien Clavel
  • Re: [R-sig-phylo] clade-specific release and radiate model? Daniel Fulop
  • Re: [R-sig-phylo] clade-specific release and radiate model? Slater, Graham
  • Re: [R-sig-phylo] clade-specific release and radiate model? Daniel Fulop
  • Re: [R-sig-phylo] clade-specific release and radiate model? Julien Clavel
• [R-sig-phylo] Phylogenetic ANOVA or PGLS for categorical data? Carlos H. Biagolini Junior
• [R-sig-phylo] fitContinuous drift model? Milton Tan
  • Re: [R-sig-phylo] fitContinuous drift model? Slater, Graham
• [R-sig-phylo] Question of how to reconstruct the ancestral state of gene numbers Cacau Centurion
• [R-sig-phylo] Phylogenetic mixed model with polymorphic binary outcome (MCMCglmm) Alberto Gallano
• [R-sig-phylo] Determining the most informative regions for a selected clade Chris Buddenhagen
• [R-sig-phylo] need to compute species rarity for each tip of the tree!!! Stranger Guy
• [R-sig-phylo] Automatic model selection with phylolm objects Diego Salazar
  • Re: [R-sig-phylo] Automatic model selection with phylolm objects Anuj Guruvacharya
• [R-sig-phylo] phytools Stranger Guy
• [R-sig-phylo] Map traits on phylogenetic tree - issue with aligning the trait symbols Christina T
  • Re: [R-sig-phylo] Map traits on phylogenetic tree - issue with aligning the trait symbols Emmanuel Paradis
• [R-sig-phylo] Problem with a script for iterating stochastic mapping + OU model comparison Marina Strelin
• [R-sig-phylo] Problem with the map.overlap function (phytools) Marina Strelin
  • Re: [R-sig-phylo] Problem with the map.overlap function (phytools) Liam J. Revell
• [R-sig-phylo] Residuals vs prediction intervals Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Residuals vs prediction intervals Sergio Ferreira Cardoso
• [R-sig-phylo] Non-ultrametric tree PGLS Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Non-ultrametric tree PGLS Theodore Garland Jr
  • Re: [R-sig-phylo] Non-ultrametric tree PGLS Alejandro Gonzalez Voyer
  • Re: [R-sig-phylo] Non-ultrametric tree PGLS Theodore Garland Jr
  • Re: [R-sig-phylo] Non-ultrametric tree PGLS Sergio Ferreira Cardoso
• Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution (Krzysztof Bartoszek) krzysztofbartoszek
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution (Krzysztof Bartoszek) Aaron King
• [R-sig-phylo] Weird estimated Lambda values (PGLS) Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Weird estimated Lambda values (PGLS) Theodore Garland Jr
  • Re: [R-sig-phylo] Weird estimated Lambda values (PGLS) Sergio Ferreira Cardoso
• [R-sig-phylo] Question about graphical superimposition of stochastic character mappings Marina Strelin
  • Re: [R-sig-phylo] Question about graphical superimposition of stochastic character mappings Josef C Uyeda
  • Re: [R-sig-phylo] Question about graphical superimposition of stochastic character mappings Liam J. Revell
• [R-sig-phylo] continued maintenance of the R-Phylo wiki Hilmar Lapp
  • Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Hilmar Lapp
  • Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Jonathan Chang
  • Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Hilmar Lapp
  • Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Vojtěch Zeisek
  • Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Hilmar Lapp
  • Re: [R-sig-phylo] continued maintenance of the R-Phylo wiki Vojtěch Zeisek
• [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Cody Dey
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Julien Clavel
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Aaron King
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Cody Dey
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Julien Clavel
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Aaron King
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Cody Dey
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Julien Clavel
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Aaron King
  • Re: [R-sig-phylo] Off-diagonal elements in multivariate OU evolution Cody Dey
• [R-sig-phylo] PGLS vs OUwie? William Gearty
  • Re: [R-sig-phylo] PGLS vs OUwie? Theodore Garland Jr
  • Re: [R-sig-phylo] PGLS vs OUwie? Julien Clavel
• [R-sig-phylo] Linear parsimony in R Diogo Melo
• [R-sig-phylo] Is it okay to model species as a fixed effect in an LMM while also accounting for phylogenetic covariance? Daniel Fulop
• [R-sig-phylo] Speciation and extinction rates with clade data - am I doing this right? Jostein Gohli
  • Re: [R-sig-phylo] Speciation and extinction rates with clade data - am I doing this right? Emmanuel Paradis
  • Re: [R-sig-phylo] Speciation and extinction rates with clade data - am I doing this right? Jostein Gohli
• Re: [R-sig-phylo] Plot phylogeny with "increasing" or "decreasing" node ages? Nick Matzke
• [R-sig-phylo] Plot phylogeny with "increasing" or "decreasing" node ages? Nick Matzke
  • Re: [R-sig-phylo] Plot phylogeny with "increasing" or "decreasing" node ages? Liam J. Revell
• [R-sig-phylo] ancestor vs. change plots Milton Tan
  • Re: [R-sig-phylo] ancestor vs. change plots Milton Tan
  • Re: [R-sig-phylo] ancestor vs. change plots Brian O'Meara
  • Re: [R-sig-phylo] ancestor vs. change plots David Bapst
  • Re: [R-sig-phylo] ancestor vs. change plots Milton Tan
  • Re: [R-sig-phylo] ancestor vs. change plots Joe Felsenstein
  • Re: [R-sig-phylo] ancestor vs. change plots Liam J. Revell
• [R-sig-phylo] - input error with make.simmap and Question about ancestral reconstruction fernan08
  • Re: [R-sig-phylo] - input error with make.simmap and Question about ancestral reconstruction Liam J. Revell
• [R-sig-phylo] bind_tree using where= "tip.label" Zachary Charlop-Powers
  • Re: [R-sig-phylo] bind_tree using where= "tip.label" Zachary Charlop-Powers
• [R-sig-phylo] Non normal PGLS results Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Non normal PGLS results Liam J. Revell
  • Re: [R-sig-phylo] Non normal PGLS results Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Non normal PGLS results Theodore Garland Jr
  • Re: [R-sig-phylo] Non normal PGLS results Sergio Ferreira Cardoso
• [R-sig-phylo] New package apex 1.0.0 released on CRAN Jombart, Thibaut
• [R-sig-phylo] Retrieving principal trees from split network Michael Gruenstaeudl
• [R-sig-phylo] PGLS - branch lengths 1 Sergio Ferreira Cardoso
• [R-sig-phylo] PGLS transformations Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] PGLS transformations Theodore Garland Jr
  • Re: [R-sig-phylo] PGLS transformations Emmanuel Paradis
  • Re: [R-sig-phylo] PGLS transformations Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] PGLS transformations Liam J. Revell
  • Re: [R-sig-phylo] PGLS transformations Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] PGLS transformations Liam J. Revell
  • Re: [R-sig-phylo] PGLS transformations Liam J. Revell
  • Re: [R-sig-phylo] PGLS transformations Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] PGLS transformations Theodore Garland Jr
  • Re: [R-sig-phylo] PGLS transformations Emmanuel Paradis
  • Re: [R-sig-phylo] PGLS transformations Sergio Ferreira Cardoso
• [R-sig-phylo] GeoSSE question Oscar Inostroza
  • Re: [R-sig-phylo] GeoSSE question Santiago Sanchez
  • Re: [R-sig-phylo] GeoSSE question Oscar Inostroza
• [R-sig-phylo] Failure to read SIMMAP 1.5 formatted tree into R Andreas Flampouris
  • Re: [R-sig-phylo] Failure to read SIMMAP 1.5 formatted tree into R Liam J. Revell
  • Re: [R-sig-phylo] Failure to read SIMMAP 1.5 formatted tree intoR Andreas Flampouris
• [R-sig-phylo] Node Ages Without Phylocom weishujuan
• [R-sig-phylo] FW: r-sig-genetics is alive! Jombart, Thibaut
• [R-sig-phylo] Phylogenetic comparative methods in R course Liam J. Revell
• [R-sig-phylo] rotate nodes to match taxonomic order Jacob Berv
  • Re: [R-sig-phylo] rotate nodes to match taxonomic order Liam J. Revell
  • Re: [R-sig-phylo] rotate nodes to match taxonomic order Emmanuel Paradis
  • Re: [R-sig-phylo] rotate nodes to match taxonomic order Jacob Berv
  • Re: [R-sig-phylo] rotate nodes to match taxonomic order Emmanuel Paradis
  • Re: [R-sig-phylo] rotate nodes to match taxonomic order Jacob Berv
• [R-sig-phylo] Phytools and simmap- comparing methods of Stochastic mapping of discrete traits fernan08
• [R-sig-phylo] Convert tree to taxonomy John Clarke
  • Re: [R-sig-phylo] Convert tree to taxonomy Eliot Miller
  • Re: [R-sig-phylo] Convert tree to taxonomy Liam J. Revell
• [R-sig-phylo] Unexpected error in 'chronos' ('ape' package) María Luisa Matey Hernández
• [R-sig-phylo] Unsual values of alpha in OU models Diego Salazar Tortosa
  • Re: [R-sig-phylo] Unsual values of alpha in OU models Aaron King
  • Re: [R-sig-phylo] Unsual values of alpha in OU models Diego Salazar Tortosa
  • Re: [R-sig-phylo] Unsual values of alpha in OU models Brian O'Meara
  • Re: [R-sig-phylo] Unsual values of alpha in OU models Slater, Graham
  • Re: [R-sig-phylo] Unsual values of alpha in OU models Aaron King
  • Re: [R-sig-phylo] Unsual values of alpha in OU models Diego Salazar Tortosa
• [R-sig-phylo] assign multiple discrete states to single tip Koski, Matthew H
  • Re: [R-sig-phylo] assign multiple discrete states to single tip Liam J. Revell
  • Re: [R-sig-phylo] assign multiple discrete states to single tip Lior Glick
  • Re: [R-sig-phylo] assign multiple discrete states to single tip Brian O'Meara
• [R-sig-phylo] Sister-clade analysis of discrete characters Lior Glick
  • Re: [R-sig-phylo] Sister-clade analysis of discrete characters William Gearty
  • Re: [R-sig-phylo] Sister-clade analysis of discrete characters Joe Felsenstein
  • Re: [R-sig-phylo] Sister-clade analysis of discrete characters Sam Brown
  • Re: [R-sig-phylo] Sister-clade analysis of discrete characters Joe Felsenstein
• [R-sig-phylo] Rooting on a node with resolve.root = TRUE Luiz Max Carvalho
  • Re: [R-sig-phylo] Rooting on a node with resolve.root = TRUE Liam J. Revell
  • Re: [R-sig-phylo] Rooting on a node with resolve.root = TRUE Emmanuel Paradis
• [R-sig-phylo] Problem with the use of list of trees in aov.phylo () command. Carlos H. Biagolini Junior
  • Re: [R-sig-phylo] Problem with the use of list of trees in aov.phylo () command. Liam J. Revell
  • Re: [R-sig-phylo] Problem with the use of list of trees in aov.phylo () command. Carlos H. Biagolini Junior
  • Re: [R-sig-phylo] Problem with the use of list of trees in aov.phylo () command. Liam J. Revell
• [R-sig-phylo] (P)GLS (nlme) vs. PGLS (caper) William Gearty
  • Re: [R-sig-phylo] (P)GLS (nlme) vs. PGLS (caper) David Bapst
• [R-sig-phylo] Ancestral state problem (length of phylogenetic and phenotypic data don't match) Hannah west
  • Re: [R-sig-phylo] Ancestral state problem (length of phylogenetic and phenotypic data don't match) f.k...@mailbox.org
  • Re: [R-sig-phylo] Ancestral state problem (length of phylogenetic and phenotypic data don't match) Liam J. Revell
• [R-sig-phylo] make.simmap with "all rates different" Laura Alencar
  • Re: [R-sig-phylo] make.simmap with "all rates different" Liam J. Revell
• [R-sig-phylo] dangerous tree Ben Bolker
  • Re: [R-sig-phylo] dangerous tree Liam J. Revell
  • Re: [R-sig-phylo] dangerous tree Emmanuel Paradis
  • Re: [R-sig-phylo] dangerous tree Ben Bolker
• Re: [R-sig-phylo] [R] APE Simon Blomberg
• [R-sig-phylo] PGLS Anova Error William Gearty
  • Re: [R-sig-phylo] PGLS Anova Error William Gearty
• [R-sig-phylo] Rohlf Medal 2015 Paul O'Higgins
• [R-sig-phylo] assigning values to the mrca Tereza Jezkova
• [R-sig-phylo] Node Ages Without Phylocom Alexandre F. Souza
  • Re: [R-sig-phylo] Node Ages Without Phylocom Marcelino de la Cruz
  • Re: [R-sig-phylo] Node Ages Without Phylocom Alexandre F. Souza
• [R-sig-phylo] Array of all branch lengths Rémi Tournebize
  • Re: [R-sig-phylo] Array of all branch lengths f.k...@mailbox.org
• [R-sig-phylo] multipage pdf of a huge tree Jonas Eberle
  • Re: [R-sig-phylo] multipage pdf of a huge tree Liam Revell
  • Re: [R-sig-phylo] multipage pdf of a huge tree Jonas Eberle
  • Re: [R-sig-phylo] multipage pdf of a huge tree Jonas Eberle
  • Re: [R-sig-phylo] multipage pdf of a huge tree Liam J. Revell
  • Re: [R-sig-phylo] multipage pdf of a huge tree Joe Felsenstein
  • Re: [R-sig-phylo] multipage pdf of a huge tree Jonas Eberle
  • Re: [R-sig-phylo] multipage pdf of a huge tree Joe Felsenstein

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