Dear Rdkit ML readers,
I am trying to install rdkit on a Centos 5.3 64 bit machine and this now for
some time but I don't stop to run into trouble.
Right now I get the following error message :
[ 80%] Built target rdMolCatalog
Linking CXX shared library libSLNParse.so
/usr/bin/ld: /root/pool/lib/libboost_regex.a(cpp_regex_traits.o): relocation
R_X86_64_32S against `std::basic_string<char, std::char_traits<char>,
std::allocator<char> >::_Rep::_S_empty_rep_storage' can not be used when making
a shared object; recompile with -fPIC
/root/pool/lib/libboost_regex.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [Code/GraphMol/SLNParse/libSLNParse.so] Error 1
make[1]: *** [Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all] Error 2
make: *** [all] Error 2
I needed basically to install lots of deps manually, including Python 2.7 (I
used --enabled-shared for the installation), numpy and deps and boost using :
./bootstrap.sh --prefix=$HOME/pool --libdir=$HOME/pool/lib
--with-libraries=python,regex
and ./bjam address-model=64 cflags=-fPIC cxxflags=-fPIC install
I don't understand the compilation error here, is it boost that I have to
recompile using 32 & 64 bit as address model?
The rdkit version I try to install is the RDKit_Q22010_1 using boost 1.41.
Thanks for your help.
Peter Schmidtke
-----------------
PhD Student
Department of Physical Chemistry
School of Pharmacy
University of Barcelona
Barcelona, Spain
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