Dear Greg, thanks for the hint, but this one changes absolutely nothing to the compilation for me...unfortunately (I completely redid the whole compilation and ended up with the same error)
Any ideas of how to debug this? Ciao Peter On 23/07/2010, at 21:48, Greg Landrum wrote: > Dear Peter, > > On Fri, Jul 23, 2010 at 12:48 PM, Peter Schmidtke <[email protected]> wrote: >> Dear Rdkit ML readers, >> I am trying to install rdkit on a Centos 5.3 64 bit machine and this now for >> some time but I don't stop to run into trouble. >> Right now I get the following error message : >> [ 80%] Built target rdMolCatalog >> Linking CXX shared library libSLNParse.so >> /usr/bin/ld: /root/pool/lib/libboost_regex.a(cpp_regex_traits.o): relocation >> R_X86_64_32S against `std::basic_string<char, std::char_traits<char>, >> std::allocator<char> >::_Rep::_S_empty_rep_storage' can not be used when >> making a shared object; recompile with -fPIC >> /root/pool/lib/libboost_regex.a: could not read symbols: Bad value >> collect2: ld returned 1 exit status >> make[2]: *** [Code/GraphMol/SLNParse/libSLNParse.so] Error 1 >> make[1]: *** [Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all] Error 2 >> make: *** [all] Error 2 > > Noel posted a good (and simple) solution to this one: > http://www.mail-archive.com/[email protected]/msg01119.html > >> I needed basically to install lots of deps manually, including Python 2.7 (I >> used --enabled-shared for the installation), numpy and deps and boost using > > A word of warning: I have not tested the code with Python2.7 yet, so > I'm not sure how things work there. > > Best regards, > -greg Peter Schmidtke ----------------- PhD Student Department of Physical Chemistry School of Pharmacy University of Barcelona Barcelona, Spain ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
