Dear Greg and Gianluca, indeed this solved the compilation problem. Now I am testing a little, let's see.
Concerning the boost dependencies...I understand your point of view. The fact is, that I like projects like rdkit and I am trying to promote them myself. The problem is only then people coming back to me saying, ah finally I didn't install because it was too complicated, especially on production environments like the 64 bit centos machines I am working with...the accumulation of gcc bugs, boost static library problems and libraries etc to update to make everything run was a bit heavy. In the contrary, installing it on a opensuse 11.1 64 bit was rather straightforward. Thanks for putting the issues I encountered in the wiki, searching mailing lists is also rather cumbersome. Cheers. Peter On 26/07/2010, at 15:47, Greg Landrum wrote: > Dear Peter, > > On Mon, Jul 26, 2010 at 3:19 PM, Peter Schmidtke <[email protected]> wrote: >> Hey Greg, >> I already compiled boost using the instructions from the rdkit wiki. Anyway, >> recompiling rdkit completely solves this problem. >> But that wasn't easy enough. Next error : >> [ 84%] Built target rdSLNParse >> [ 85%] Building CXX object > ... snip ... >> /root/pool/include/boost/type_traits/detail/cv_traits_impl.hpp:37: internal >> compiler error: in make_rtl_for_nonlocal_decl, at cp/decl.c:5067 >> Please submit a full bug report, >> with preprocessed source if appropriate. >> See <URL:http://bugzilla.redhat.com/bugzilla> for instructions. >> Preprocessed source stored into /tmp/ccgSaXge.out file, please attach this >> to your bugreport. >> make[2]: *** [Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o] >> Error 1 >> make[1]: *** [Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all] Error 2 >> make: *** [all] Error 2 >> >> >> I saw this error online also, and people suggested to add >> the BOOST_PYTHON_NO_PY_SIGNATURES >> flag, and recompile boost, which is what I did, but no effect on this >> error. > > Ah... it's not boost that you need to recompile. Add the following to > the top of $RDBASE/Code/GraphMol/Wrap/EditableMol.cpp: > #define BOOST_PYTHON_NO_PY_SIGNATURES > > (related post: > http://www.mail-archive.com/[email protected]/msg01178.html) > >> Someone has an idea? Are there plans to come around these boost dependencies >> in rdkit...it's a real showstopper on older systems...real pain to get it >> installed :( > > No plans to stop using boost, sorry. The fact that the RDKit uses such > a high-quality, well-documented library (that is maintained by someone > else) is actually one of the strengths of the project. The problem you > describe above is a bug in gcc, not a problem with boost. > > -greg Peter Schmidtke ----------------- PhD Student Department of Physical Chemistry School of Pharmacy University of Barcelona Barcelona, Spain ------------------------------------------------------------------------------ The Palm PDK Hot Apps Program offers developers who use the Plug-In Development Kit to bring their C/C++ apps to Palm for a share of $1 Million in cash or HP Products. Visit us here for more details: http://ad.doubleclick.net/clk;226879339;13503038;l? http://clk.atdmt.com/CRS/go/247765532/direct/01/ _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
